UHGV-0173546

Genome information

Genome length 40,348 bps

CDS count 60

Completeness 100.00% (complete)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173546
vOTU ID	vOTU-046493
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583702
BioSample	SAMN09781759
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.48
Jumbo phage	No

Genome content
Genome length	40,348 bps
GC content	54.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.45%
Average CDS length	611.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173546_2	KOfam	K14059	int; integrase	NA
UHGV-0173546_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0173546_2	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-0173546_2	eggNOG-mapper	1226322.HMPREF1545_03745	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0173546_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173546_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173546_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0173546_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173546_3	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0173546_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173546_4	UniRef90	UniRef90_A0A3D3W9W9	HTH cro/C1-type domain-containing protein	NA
UHGV-0173546_4	eggNOG-mapper	658659.HMPREF0983_03304	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173546_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0173546_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173546_4	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0173546_5	UniRef90	UniRef90_UPI001C1045C3	helix-turn-helix domain-containing protein	NA
UHGV-0173546_5	eggNOG-mapper	1211817.CCAT010000053_gene2103	Helix-turn-helix	NA
UHGV-0173546_5	Pfam	PF05339	NA	DUF739
UHGV-0173546_5	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0173546_8	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-0173546_9	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0173546_12	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173546_12	UniRef90	UniRef90_UPI000952E6A4	YqaJ viral recombinase family protein	NA
UHGV-0173546_12	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0173546_12	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0173546_12	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0173546_12	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0173546_12	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0173546_13	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0173546_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0173546_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173546_14	UniRef90	UniRef90_UPI0018C50A8E	recombinase RecT	NA
UHGV-0173546_14	eggNOG-mapper	1462526.BN990_03852	RecT family	NA
UHGV-0173546_14	Pfam	PF03837	RecT family	RecT
UHGV-0173546_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0173546_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0173546_14	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0173546_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173546_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173546_15	UniRef90	UniRef90_A0A3D2HZK1	Single-stranded DNA-binding protein	NA
UHGV-0173546_15	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0173546_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173546_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173546_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173546_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173546_15	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0173546_16	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0173546_16	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-0173546_17	PHROG	phrog_1029	NA	unknown function
UHGV-0173546_17	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0173546_17	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0173546_17	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0173546_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0173546_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0173546_18	UniRef90	UniRef90_A0A356Z6K2	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0173546_18	eggNOG-mapper	883110.HMPREF9260_00672	holliday junction resolvase	NA
UHGV-0173546_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0173546_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0173546_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0173546_19	PHROG	phrog_4973	NA	unknown function
UHGV-0173546_19	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0173546_19	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0173546_19	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0173546_19	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0173546_20	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0173546_20	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0173546_20	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0173546_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0173546_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0173546_21	UniRef90	UniRef90_A0A3A5TME7	AAA family ATPase	NA
UHGV-0173546_21	eggNOG-mapper	665950.HMPREF1025_02330	IstB-like ATP binding protein	NA
UHGV-0173546_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0173546_21	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0173546_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0173546_21	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0173546_23	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0173546_23	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0173546_23	UniRef90	UniRef90_UPI00164AFBC1	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0173546_23	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0173546_23	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0173546_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0173546_23	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0173546_26	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0173546_26	UniRef90	UniRef90_D4LDV0	Restriction alleviation protein, Lar family	NA
UHGV-0173546_26	eggNOG-mapper	56780.SYN_03368	translation initiation factor activity	NA
UHGV-0173546_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0173546_26	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0173546_26	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0173546_26	COG	COG1601	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	NA
UHGV-0173546_26	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0173546_27	PHROG	phrog_3136	NA	unknown function
UHGV-0173546_27	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0173546_27	Pfam	PF04266	ASCH domain	ASCH
UHGV-0173546_27	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0173546_27	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0173546_29	PHROG	phrog_37916	NA	unknown function
UHGV-0173546_32	Structural annotation	PF21166	NA	NA
UHGV-0173546_33	UniRef90	UniRef90_UPI001C01A488	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0173546_33	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0173546_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0173546_33	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0173546_34	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0173546_34	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0173546_34	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0173546_35	eggNOG-mapper	693746.OBV_01730	NA	NA
UHGV-0173546_35	Structural annotation	PF11650	NA	NA
UHGV-0173546_37	eggNOG-mapper	264201.pc1903	NA	NA
UHGV-0173546_39	PHROG	phrog_15863	NA	unknown function
UHGV-0173546_39	UniRef90	UniRef90_UPI00068FC51E	J domain-containing protein	NA
UHGV-0173546_39	eggNOG-mapper	1519439.JPJG01000053_gene1369	DnaJ molecular chaperone homology domain	NA
UHGV-0173546_39	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0173546_39	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0173546_41	eggNOG-mapper	1378168.N510_01472	NA	NA
UHGV-0173546_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173546_43	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0173546_43	UniRef90	UniRef90_A0A6A8VHX7	Terminase_3 domain-containing protein	NA
UHGV-0173546_43	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0173546_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0173546_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173546_43	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0173546_45	PHROG	phrog_422	major head protein	head and packaging
UHGV-0173546_45	UniRef90	UniRef90_A0A2V2DLC4	N4-gp56 family major capsid protein	NA
UHGV-0173546_45	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-0173546_45	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0173546_45	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0173546_47	PHROG	phrog_156	portal protein	head and packaging
UHGV-0173546_47	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0173546_47	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0173546_48	eggNOG-mapper	931626.Awo_c30920	COG NOG18825 non supervised orthologous group	NA
UHGV-0173546_51	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0173546_52	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0173546_52	PHROG	phrog_894	endolysin	lysis
UHGV-0173546_52	UniRef90	UniRef90_R5EEL2	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0173546_52	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0173546_52	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0173546_52	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0173546_52	COG	COG3108	NA	NA
UHGV-0173546_52	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0173546_53	PHROG	phrog_918	NA	unknown function
UHGV-0173546_53	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0173546_53	eggNOG-mapper	411902.CLOBOL_05677	NA	NA
UHGV-0173546_53	Pfam	PF19791	NA	DUF6275
UHGV-0173546_53	Structural annotation	PF19791	NA	NA
UHGV-0173546_54	PHROG	phrog_1863	NA	unknown function
UHGV-0173546_54	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0173546_55	PHROG	phrog_774	NA	unknown function
UHGV-0173546_55	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0173546_56	PHROG	phrog_10091	holin	lysis
UHGV-0173546_56	UniRef90	UniRef90_A0A1Y4RHF4	Phage holin	NA
UHGV-0173546_56	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0173546_56	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0173546_56	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0173546_56	COG	COG5546	NA	NA
UHGV-0173546_56	Structural annotation	COG5546	NA	NA
UHGV-0173546_57	Structural annotation	PF01047, MF_00620, COG2771	NA	NA