UHGV-0173549

Genome information

Genome length 12,790 bps

CDS count 17

Completeness 93.57% (high-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173549
vOTU ID	vOTU-061709
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_560573
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.57% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.25
Jumbo phage	No

Genome content
Genome length	12,790 bps
GC content	33.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	17
CDS density	92.99%
Average CDS length	706.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173549_1	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0173549_1	UniRef90	UniRef90_A0A316S5V3	DNA-directed DNA polymerase	NA
UHGV-0173549_1	eggNOG-mapper	1128071.G9J3H2_9CAUD	nucleotide binding	NA
UHGV-0173549_1	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0173549_1	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0173549_7	Structural annotation	PF17427	NA	NA
UHGV-0173549_8	PHROG	phrog_2150	terminase	head and packaging
UHGV-0173549_8	UniRef90	UniRef90_A0A2Z4GUD4	DNA encapsidation protein	NA
UHGV-0173549_8	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0173549_8	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0173549_10	Structural annotation	PF18342, NF041850, COG4991	NA	NA
UHGV-0173549_12	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0173549_12	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0173549_13	Structural annotation	PF20934	NA	NA
UHGV-0173549_14	PHROG	phrog_11037	NA	unknown function
UHGV-0173549_14	UniRef90	UniRef90_A0A316SHS7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0173549_14	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-0173549_14	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0173549_14	COG	COG3942	Surface antigen	NA
UHGV-0173549_14	Structural annotation	PF18013	NA	NA
UHGV-0173549_15	PHROG	phrog_2038	upper collar connector	connector
UHGV-0173549_15	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0173549_15	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0173549_15	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0173549_17	UniRef90	UniRef90_A0A316S9E2	SGNH_hydro domain-containing protein (Fragment)	NA
UHGV-0173549_17	Structural annotation	PF16255, PF08931, NF007819, COG2755	NA	NA