UHGV-0173551

Genome information

Genome length 39,795 bps

CDS count 70

Completeness 100.00% (complete)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173551
vOTU ID	vOTU-046494
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_560541
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.79
Jumbo phage	No

Genome content
Genome length	39,795 bps
GC content	54.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	91.28%
Average CDS length	521.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173551_1	PHROG	phrog_544	major head protein	head and packaging
UHGV-0173551_1	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0173551_1	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0173551_3	PHROG	phrog_17977	NA	unknown function
UHGV-0173551_3	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0173551_3	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0173551_4	PHROG	phrog_17405	head protein	head and packaging
UHGV-0173551_4	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0173551_4	Structural annotation	PF11367	NA	NA
UHGV-0173551_5	PHROG	phrog_885	major tail protein	tail
UHGV-0173551_5	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0173551_5	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0173551_5	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0173551_6	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0173551_7	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0173551_7	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0173551_7	eggNOG-mapper	1504822.CCNO01000012_gene489	phage tail tape measure protein	NA
UHGV-0173551_7	COG	COG5412	Phage-related protein	NA
UHGV-0173551_7	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0173551_8	UniRef90	UniRef90_R6N293	Putative phage tail component domain protein	NA
UHGV-0173551_8	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0173551_9	PHROG	phrog_5555	tail protein	tail
UHGV-0173551_9	UniRef90	UniRef90_UPI00085C46C7	phage tail protein	NA
UHGV-0173551_9	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0173551_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173551_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0173551_9	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0173551_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0173551_10	Structural annotation	PF10651, TIGR02059	NA	NA
UHGV-0173551_11	PHROG	phrog_4105	NA	unknown function
UHGV-0173551_11	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0173551_11	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0173551_13	PHROG	phrog_7805	NA	unknown function
UHGV-0173551_13	UniRef90	UniRef90_UPI0009E7940D	SEC-C domain-containing protein	NA
UHGV-0173551_13	eggNOG-mapper	1391646.AVSU01000117_gene830	NA	NA
UHGV-0173551_14	PHROG	phrog_881	holin	lysis
UHGV-0173551_14	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0173551_14	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0173551_14	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0173551_14	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0173551_15	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0173551_15	PHROG	phrog_435	endolysin	lysis
UHGV-0173551_15	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0173551_15	eggNOG-mapper	994573.T472_0212035	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173551_15	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0173551_15	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0173551_15	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173551_15	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, COG0860, COG3409	NA	NA
UHGV-0173551_18	PHROG	phrog_21718	NA	unknown function
UHGV-0173551_18	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0173551_19	PHROG	phrog_22984	NA	unknown function
UHGV-0173551_20	PHROG	phrog_16490	NA	unknown function
UHGV-0173551_20	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0173551_21	PHROG	phrog_20016	NA	unknown function
UHGV-0173551_21	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0173551_21	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0173551_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0173551_22	Structural annotation	PF12510	NA	NA
UHGV-0173551_23	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0173551_24	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0173551_24	PHROG	phrog_95	integrase	integration and excision
UHGV-0173551_24	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0173551_24	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0173551_24	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0173551_24	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0173551_24	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0173551_24	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0173551_25	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0173551_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173551_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0173551_25	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0173551_29	Structural annotation	PF03885	NA	NA
UHGV-0173551_30	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0173551_30	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-0173551_31	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0173551_31	eggNOG-mapper	1514668.JOOA01000002_gene1643	NA	NA
UHGV-0173551_31	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0173551_31	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0173551_31	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0173551_34	PHROG	phrog_22529	NA	unknown function
UHGV-0173551_34	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-0173551_34	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0173551_34	Pfam	PF06725	3D domain	3D
UHGV-0173551_34	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0173551_34	Structural annotation	COG3584	NA	NA
UHGV-0173551_36	PHROG	phrog_4433	NA	unknown function
UHGV-0173551_36	eggNOG-mapper	106648.BBLJ01000054_gene3814	regulation of DNA-templated transcription, elongation	NA
UHGV-0173551_36	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0173551_37	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0173551_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173551_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173551_37	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-0173551_39	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0173551_39	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0173551_39	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0173551_39	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0173551_39	Structural annotation	PF05565	NA	NA
UHGV-0173551_40	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173551_40	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0173551_40	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0173551_40	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0173551_41	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0173551_41	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0173551_41	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0173551_41	Structural annotation	PF05772	NA	NA
UHGV-0173551_42	PHROG	phrog_7566	NA	unknown function
UHGV-0173551_42	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0173551_42	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0173551_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173551_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173551_43	UniRef90	UniRef90_A0A1Q6R0X3	Single-stranded DNA-binding protein	NA
UHGV-0173551_43	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0173551_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173551_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173551_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173551_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173551_43	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0173551_46	PHROG	phrog_15768	NA	unknown function
UHGV-0173551_46	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0173551_46	eggNOG-mapper	445970.ALIPUT_02689	DNA-binding transcription factor activity	NA
UHGV-0173551_46	Pfam	PF19808	NA	DUF6291
UHGV-0173551_46	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0173551_46	Structural annotation	PF19808	NA	NA
UHGV-0173551_47	PHROG	phrog_9804	NA	unknown function
UHGV-0173551_47	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-0173551_47	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0173551_47	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0173551_47	Structural annotation	PF11417	NA	NA
UHGV-0173551_49	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0173551_49	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0173551_49	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0173551_49	Pfam	PF06356	NA	DUF1064
UHGV-0173551_49	Structural annotation	PF06356	NA	NA
UHGV-0173551_52	eggNOG-mapper	657322.FPR_23130	NA	NA
UHGV-0173551_53	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0173551_53	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0173551_53	UniRef90	UniRef90_A0A6L5TDR3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0173551_53	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0173551_53	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0173551_53	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0173551_57	PHROG	phrog_38832	NA	unknown function
UHGV-0173551_57	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0173551_57	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0173551_58	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0173551_58	UniRef90	UniRef90_A0A315Y4I9	Lar family restriction alleviation protein	NA
UHGV-0173551_58	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0173551_58	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0173551_58	Structural annotation	TIGR03655	NA	NA
UHGV-0173551_61	PHROG	phrog_25567	NA	unknown function
UHGV-0173551_61	eggNOG-mapper	742740.HMPREF9474_00056	NA	NA
UHGV-0173551_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173551_63	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0173551_63	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0173551_63	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0173551_63	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0173551_63	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0173551_63	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0173551_63	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0173551_63	COG	COG0863	DNA modification methylase	NA
UHGV-0173551_63	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0173551_65	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173551_65	PHROG	phrog_10250	NA	unknown function
UHGV-0173551_65	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0173551_65	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0173551_65	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0173551_65	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0173551_65	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0173551_65	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173551_65	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0173551_66	PHROG	phrog_64	portal protein	head and packaging
UHGV-0173551_66	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0173551_66	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0173551_66	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0173551_66	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0173551_67	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0173551_67	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0173551_67	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0173551_67	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0173551_67	COG	COG2369	NA	NA
UHGV-0173551_67	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0173551_68	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0173551_68	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0173551_68	eggNOG-mapper	1158602.I590_02569	NA	NA
UHGV-0173551_68	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0173551_68	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0173551_69	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0173551_69	Structural annotation	PF06810	NA	NA
UHGV-0173551_70	eggNOG-mapper	476272.RUMHYD_01776	NA	NA