UHGV-0173559

Genome information

Genome length 43,014 bps

CDS count 67

Completeness 96.14% (high-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173559
vOTU ID	vOTU-066787
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591575
BioSample	SAMN09781791
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.14% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.68
Jumbo phage	No

Genome content
Genome length	43,014 bps
GC content	45.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	89.02%
Average CDS length	576.90 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173559_1	PHROG	phrog_36464	NA	unknown function
UHGV-0173559_1	eggNOG-mapper	1235798.C817_05488	NA	NA
UHGV-0173559_1	Structural annotation	PF09035	NA	NA
UHGV-0173559_2	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0173559_7	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173559_7	UniRef90	UniRef90_A0A352BM23	NA	NA
UHGV-0173559_7	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0173559_7	Pfam	PF06378	NA	DUF1071
UHGV-0173559_7	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0173559_8	PHROG	phrog_398	NA	unknown function
UHGV-0173559_8	UniRef90	UniRef90_UPI001E5E0390	putative HNHc nuclease	NA
UHGV-0173559_8	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0173559_8	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0173559_8	Structural annotation	PF16784	NA	NA
UHGV-0173559_10	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0173559_10	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0173559_10	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0173559_11	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0173559_11	UniRef90	UniRef90_UPI001A9B7C73	conserved phage C-terminal domain-containing protein	NA
UHGV-0173559_11	eggNOG-mapper	1304866.K413DRAFT_1200	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0173559_11	Pfam	PF19808	NA	DUF6291
UHGV-0173559_11	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0173559_11	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0173559_11	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0173559_11	Structural annotation	PF19808	NA	NA
UHGV-0173559_13	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0173559_13	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0173559_13	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0173559_13	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0173559_13	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0173559_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0173559_13	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0173559_13	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0173559_15	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0173559_15	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0173559_15	UniRef90	UniRef90_A0A174GZ53	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0173559_15	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0173559_15	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0173559_15	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0173559_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0173559_15	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0173559_16	PHROG	phrog_20593	NA	unknown function
UHGV-0173559_17	PHROG	phrog_21101	NA	unknown function
UHGV-0173559_17	UniRef90	UniRef90_UPI001C02123C	NA	NA
UHGV-0173559_17	eggNOG-mapper	1123489.AUAN01000003_gene1171	NA	NA
UHGV-0173559_17	Pfam	PF07866	NA	DUF1653
UHGV-0173559_17	COG	COG4728	NA	NA
UHGV-0173559_17	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0173559_19	PHROG	phrog_874	NA	unknown function
UHGV-0173559_19	eggNOG-mapper	1232449.BAHV02000016_gene1832	NA	NA
UHGV-0173559_24	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0173559_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173559_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0173559_25	UniRef90	UniRef90_A0A412EKJ9	PBSX family phage terminase large subunit	NA
UHGV-0173559_25	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0173559_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0173559_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0173559_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0173559_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0173559_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173559_25	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0173559_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0173559_26	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0173559_26	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0173559_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0173559_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0173559_28	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0173559_28	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0173559_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0173559_28	COG	COG2369	NA	NA
UHGV-0173559_28	Structural annotation	PF06152	NA	NA
UHGV-0173559_29	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0173559_31	PHROG	phrog_21718	NA	unknown function
UHGV-0173559_31	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0173559_33	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0173559_35	PHROG	phrog_20016	NA	unknown function
UHGV-0173559_35	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-0173559_35	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0173559_35	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0173559_36	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0173559_38	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0173559_38	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0173559_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0173559_39	PHROG	phrog_247	major head protein	head and packaging
UHGV-0173559_39	UniRef90	UniRef90_A0A3R6K7E9	Phage coat protein	NA
UHGV-0173559_39	eggNOG-mapper	1292035.H476_1014	NA	NA
UHGV-0173559_39	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0173559_39	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0173559_39	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0173559_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0173559_40	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0173559_41	PHROG	phrog_28328	NA	unknown function
UHGV-0173559_42	PHROG	phrog_1129	holin	lysis
UHGV-0173559_42	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-0173559_42	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0173559_42	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0173559_42	Structural annotation	PF06946	NA	NA
UHGV-0173559_43	PHROG	phrog_9479	NA	unknown function
UHGV-0173559_43	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0173559_43	Structural annotation	PF15529	NA	NA
UHGV-0173559_45	PHROG	phrog_8680	NA	unknown function
UHGV-0173559_45	UniRef90	UniRef90_UPI001C0F342A	NA	NA
UHGV-0173559_45	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0173559_45	Pfam	PF14386	NA	DUF4417
UHGV-0173559_45	Structural annotation	PF14386	NA	NA
UHGV-0173559_46	PHROG	phrog_3366	NA	unknown function
UHGV-0173559_46	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0173559_46	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0173559_47	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0173559_47	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0173559_47	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0173559_47	Structural annotation	PF11114	NA	NA
UHGV-0173559_48	PHROG	phrog_3266	tail completion	connector
UHGV-0173559_48	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0173559_48	Structural annotation	PF12691	NA	NA
UHGV-0173559_49	PHROG	phrog_3099	NA	unknown function
UHGV-0173559_49	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-0173559_49	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0173559_50	PHROG	phrog_11299	NA	unknown function
UHGV-0173559_50	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0173559_50	Structural annotation	PF10666	NA	NA
UHGV-0173559_51	PHROG	phrog_706	NA	unknown function
UHGV-0173559_51	UniRef90	UniRef90_A0A173TZF2	Bacteriophage Gp15 protein	NA
UHGV-0173559_51	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-0173559_51	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0173559_51	Structural annotation	PF06854	NA	NA
UHGV-0173559_52	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0173559_52	UniRef90	UniRef90_A0A1C5N853	Phage-related protein	NA
UHGV-0173559_52	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0173559_52	COG	COG5412	Phage-related protein	NA
UHGV-0173559_53	PHROG	phrog_1194	NA	unknown function
UHGV-0173559_53	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0173559_54	PHROG	phrog_6616	tail protein	tail
UHGV-0173559_54	UniRef90	UniRef90_A0A173R8I5	Peptidase S74 domain-containing protein	NA
UHGV-0173559_54	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0173559_54	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0173559_54	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0173559_55	PHROG	phrog_25888	NA	unknown function
UHGV-0173559_55	eggNOG-mapper	33035.JPJF01000093_gene2239	NA	NA
UHGV-0173559_56	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0173559_56	COG	COG4675	Phage tail collar domain	NA
UHGV-0173559_57	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0173559_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0173559_57	UniRef90	UniRef90_A0A351URM1	Tyr recombinase domain-containing protein (Fragment)	NA
UHGV-0173559_57	eggNOG-mapper	610130.Closa_0719	Belongs to the 'phage' integrase family	NA
UHGV-0173559_57	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0173559_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173559_57	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0173559_57	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0173559_58	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0173559_58	PHROG	phrog_435	endolysin	lysis
UHGV-0173559_58	UniRef90	UniRef90_A0A355TJT7	MurNAc-LAA domain-containing protein	NA
UHGV-0173559_58	eggNOG-mapper	1414720.CBYM010000040_gene1663	Ami_3	NA
UHGV-0173559_58	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0173559_58	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173559_58	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0173559_60	PHROG	phrog_2329	NA	unknown function
UHGV-0173559_60	UniRef90	UniRef90_A0A7X5CB73	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0173559_60	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-0173559_60	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0173559_61	KOfam	K14059	int; integrase	NA
UHGV-0173559_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0173559_61	UniRef90	UniRef90_A0A1C6K4B6	Tyrosine recombinase XerD	NA
UHGV-0173559_61	eggNOG-mapper	742740.HMPREF9474_03478	DNA integration	NA
UHGV-0173559_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173559_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173559_61	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0173559_62	PHROG	phrog_4431	NA	unknown function
UHGV-0173559_62	UniRef90	UniRef90_A0A374AGP7	SHOCT domain-containing protein	NA
UHGV-0173559_62	eggNOG-mapper	1449343.JQLQ01000002_gene1561	NA	NA
UHGV-0173559_62	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0173559_62	Structural annotation	PF05120	NA	NA
UHGV-0173559_63	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0173559_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173559_63	UniRef90	UniRef90_A0A373NS05	XRE family transcriptional regulator	NA
UHGV-0173559_63	eggNOG-mapper	683837.lse_1630	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173559_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173559_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173559_63	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0173559_64	UniRef90	UniRef90_A0A373NQX7	XRE family transcriptional regulator	NA
UHGV-0173559_64	eggNOG-mapper	1163671.JAGI01000002_gene3923	NA	NA
UHGV-0173559_64	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0173559_67	PHROG	phrog_12206	NA	unknown function
UHGV-0173559_67	Structural annotation	PF13601, MF_01819, NF008565, COG1846	NA	NA