UHGV-0173585

Genome information

Genome length 56,502 bps

CDS count 93

Completeness 97.90% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173585
vOTU ID	vOTU-067807
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584271
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.29
Jumbo phage	No

Genome content
Genome length	56,502 bps
GC content	48.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	93
CDS density	84.24%
Average CDS length	514.07 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173585_1	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0173585_2	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0173585_3	PHROG	phrog_7070	NA	unknown function
UHGV-0173585_3	eggNOG-mapper	1195072.M4HPW0_9CAUD	NA	NA
UHGV-0173585_5	PHROG	phrog_10980	NA	unknown function
UHGV-0173585_5	UniRef90	UniRef90_G3MA20	Gp279	NA
UHGV-0173585_6	Structural annotation	PF07878	NA	NA
UHGV-0173585_8	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0173585_8	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0173585_8	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0173585_8	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0173585_8	Pfam	PF13614	AAA domain	AAA_31
UHGV-0173585_8	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0173585_8	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0173585_10	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0173585_10	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0173585_10	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0173585_10	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0173585_10	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0173585_10	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0173585_10	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0173585_11	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0173585_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173585_11	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0173585_15	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0173585_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173585_15	UniRef90	UniRef90_A0A373XY93	XRE family transcriptional regulator	NA
UHGV-0173585_15	eggNOG-mapper	665956.HMPREF1032_02614	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0173585_15	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0173585_15	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0173585_16	UniRef90	UniRef90_A0A7X1LWA7	XRE family transcriptional regulator	NA
UHGV-0173585_16	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0173585_16	Structural annotation	TIGR03070	NA	NA
UHGV-0173585_17	Structural annotation	PF10922	NA	NA
UHGV-0173585_20	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0173585_20	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0173585_21	Structural annotation	PF14143	NA	NA
UHGV-0173585_22	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0173585_22	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0173585_22	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0173585_24	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173585_24	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0173585_24	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0173585_24	Pfam	PF13479	AAA domain	AAA_24
UHGV-0173585_24	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0173585_25	PHROG	phrog_18107	NA	unknown function
UHGV-0173585_25	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0173585_25	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0173585_25	Structural annotation	PF05037	NA	NA
UHGV-0173585_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0173585_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0173585_26	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0173585_26	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0173585_26	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0173585_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0173585_26	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0173585_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0173585_26	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0173585_28	PHROG	phrog_3136	NA	unknown function
UHGV-0173585_28	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0173585_28	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0173585_28	Pfam	PF04266	ASCH domain	ASCH
UHGV-0173585_28	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0173585_28	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0173585_29	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0173585_29	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0173585_29	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0173585_29	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0173585_31	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0173585_36	Structural annotation	PF16677	NA	NA
UHGV-0173585_37	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0173585_37	PHROG	phrog_200	lipoprotein	other
UHGV-0173585_37	UniRef90	UniRef90_D4KCF4	Membrane protease subunits, stomatin/prohibitin homologs	NA
UHGV-0173585_37	eggNOG-mapper	657322.FPR_23460	prohibitin homologues	NA
UHGV-0173585_37	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0173585_37	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0173585_37	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0173585_39	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0173585_39	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0173585_39	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0173585_39	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0173585_40	PHROG	phrog_14697	NA	unknown function
UHGV-0173585_40	eggNOG-mapper	665950.HMPREF1025_01969	COG NOG28949 non supervised orthologous group	NA
UHGV-0173585_40	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0173585_44	Structural annotation	NF041588	NA	NA
UHGV-0173585_45	UniRef90	UniRef90_A0A2V2F8Z8	NA	NA
UHGV-0173585_45	Pfam	PF04448	NA	DUF551
UHGV-0173585_45	Structural annotation	NF041588	NA	NA
UHGV-0173585_48	PHROG	phrog_15768	NA	unknown function
UHGV-0173585_48	UniRef90	UniRef90_A0A316T437	NA	NA
UHGV-0173585_48	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0173585_48	Pfam	PF19808	NA	DUF6291
UHGV-0173585_48	Structural annotation	PF19808	NA	NA
UHGV-0173585_49	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0173585_49	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0173585_49	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-0173585_49	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0173585_49	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0173585_49	COG	COG0305	Replicative DNA helicase	NA
UHGV-0173585_49	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0173585_50	PHROG	phrog_1709	NA	unknown function
UHGV-0173585_50	eggNOG-mapper	500632.CLONEX_01053	NA	NA
UHGV-0173585_52	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173585_52	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0173585_55	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0173585_55	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0173585_55	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-0173585_57	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0173585_57	UniRef90	UniRef90_UPI0005605D1F	phage regulatory protein/antirepressor Ant	NA
UHGV-0173585_57	eggNOG-mapper	947981.E9LUT0_9CAUD	DNA binding	NA
UHGV-0173585_57	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0173585_57	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0173585_57	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0173585_57	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0173585_58	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0173585_60	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0173585_60	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0173585_60	UniRef90	UniRef90_A0A1H3G7A1	Site-specific DNA recombinase	NA
UHGV-0173585_60	eggNOG-mapper	931626.Awo_c01430	Resolvase, N terminal domain	NA
UHGV-0173585_60	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0173585_60	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0173585_60	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0173585_61	Structural annotation	NF009949	NA	NA
UHGV-0173585_65	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0173585_65	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0173585_65	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0173585_65	COG	COG5410	NA	NA
UHGV-0173585_65	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0173585_67	PHROG	phrog_64	portal protein	head and packaging
UHGV-0173585_67	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0173585_67	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0173585_67	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0173585_67	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0173585_68	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0173585_68	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0173585_68	Structural annotation	PF14359, NF040588, COG3613	NA	NA
UHGV-0173585_70	PHROG	phrog_909	major head protein	head and packaging
UHGV-0173585_71	PHROG	phrog_29	major head protein	head and packaging
UHGV-0173585_71	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0173585_71	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0173585_71	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0173585_71	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0173585_72	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0173585_72	Structural annotation	TIGR01560	NA	NA
UHGV-0173585_73	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0173585_73	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0173585_74	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0173585_75	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0173585_76	PHROG	phrog_158	major tail protein	tail
UHGV-0173585_76	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0173585_76	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0173585_76	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0173585_77	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0173585_77	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0173585_77	Pfam	PF16478	NA	DUF5055
UHGV-0173585_77	Structural annotation	PF16478	NA	NA
UHGV-0173585_78	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0173585_79	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0173585_79	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0173585_79	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0173585_80	PHROG	phrog_1194	NA	unknown function
UHGV-0173585_80	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0173585_80	Pfam	PF20458	NA	DUF6711
UHGV-0173585_80	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0173585_81	PHROG	phrog_13879	NA	unknown function
UHGV-0173585_81	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0173585_81	Pfam	PF19789	NA	DUF6273
UHGV-0173585_81	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0173585_82	PHROG	phrog_18725	NA	unknown function
UHGV-0173585_82	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0173585_83	PHROG	phrog_9625	NA	unknown function
UHGV-0173585_83	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-0173585_83	Structural annotation	MF_04106	NA	NA
UHGV-0173585_85	PHROG	phrog_1382	NA	unknown function
UHGV-0173585_85	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0173585_86	KOfam	K07273	acm; lysozyme	NA
UHGV-0173585_86	PHROG	phrog_291	endolysin	lysis
UHGV-0173585_86	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0173585_86	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0173585_86	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0173585_86	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0173585_86	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0173585_88	PHROG	phrog_15303	NA	unknown function
UHGV-0173585_88	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0173585_93	eggNOG-mapper	445972.ANACOL_01880	NA	NA