UHGV-0173597

Genome information

Genome length 26,594 bps

CDS count 44

Completeness 60.09% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173597
vOTU ID	vOTU-028693
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590732
BioSample	SAMN09781782
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.1
Jumbo phage	No

Genome content
Genome length	26,594 bps
GC content	61.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	90.36%
Average CDS length	548.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173597_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0173597_2	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0173597_2	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0173597_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0173597_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173597_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0173597_5	Structural annotation	MF_00273	NA	NA
UHGV-0173597_12	Structural annotation	PF07039	NA	NA
UHGV-0173597_14	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0173597_14	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0173597_16	PHROG	phrog_23265	NA	unknown function
UHGV-0173597_16	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0173597_16	Structural annotation	NF007410	NA	NA
UHGV-0173597_17	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0173597_17	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0173597_17	eggNOG-mapper	40631.O64365_BPN15	NA	NA
UHGV-0173597_17	Pfam	PF14359	NA	DUF4406
UHGV-0173597_17	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0173597_18	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0173597_18	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0173597_18	UniRef90	UniRef90_A0A8D9PDC5	Adenine specific DNA methyltransferase	NA
UHGV-0173597_18	eggNOG-mapper	1268240.ATFI01000007_gene431	DNA methylase	NA
UHGV-0173597_18	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0173597_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0173597_18	COG	COG0863	DNA modification methylase	NA
UHGV-0173597_19	PHROG	phrog_918	NA	unknown function
UHGV-0173597_19	UniRef90	UniRef90_UPI00115A7D93	NA	NA
UHGV-0173597_19	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0173597_19	Pfam	PF19791	NA	DUF6275
UHGV-0173597_19	Structural annotation	PF19791	NA	NA
UHGV-0173597_20	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0173597_20	UniRef90	UniRef90_H1CCS3	Elp3 domain-containing protein	NA
UHGV-0173597_20	eggNOG-mapper	742817.HMPREF9449_01796	radical SAM domain protein	NA
UHGV-0173597_20	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0173597_20	Structural annotation	PF04055, MF_01864, TIGR04072, COG0621	NA	NA
UHGV-0173597_24	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0173597_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0173597_26	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-0173597_26	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0173597_27	eggNOG-mapper	1226322.HMPREF1545_00288	NA	NA
UHGV-0173597_27	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-0173597_28	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0173597_28	eggNOG-mapper	1226322.HMPREF1545_03842	DNA-packaging protein gp3	NA
UHGV-0173597_28	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0173597_28	Structural annotation	PF16677	NA	NA
UHGV-0173597_29	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0173597_29	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0173597_29	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0173597_30	PHROG	phrog_30034	NA	unknown function
UHGV-0173597_30	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0173597_30	eggNOG-mapper	1235796.C815_00903	NA	NA
UHGV-0173597_30	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0173597_32	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0173597_32	UniRef90	UniRef90_A0A3R6IMQ7	NA	NA
UHGV-0173597_32	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0173597_32	Pfam	PF14359	NA	DUF4406
UHGV-0173597_32	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0173597_33	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0173597_33	PHROG	phrog_15001	endolysin	lysis
UHGV-0173597_33	UniRef90	UniRef90_A0A7X7U879	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0173597_33	eggNOG-mapper	1235835.C814_01292	Ami_2	NA
UHGV-0173597_33	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0173597_33	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0173597_33	COG	COG1388	LysM repeat	NA
UHGV-0173597_33	Structural annotation	PF18342, PF01510, NF041850, COG5632	NA	NA
UHGV-0173597_34	PHROG	phrog_937	hemolysin	other
UHGV-0173597_34	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0173597_35	PHROG	phrog_443	holin	lysis
UHGV-0173597_35	UniRef90	UniRef90_UPI0002E2AC7F	holin	NA
UHGV-0173597_35	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0173597_35	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0173597_35	Structural annotation	PF16945	NA	NA
UHGV-0173597_37	PHROG	phrog_35275	NA	unknown function
UHGV-0173597_37	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-0173597_38	PHROG	phrog_24113	NA	unknown function
UHGV-0173597_38	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0173597_38	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0173597_39	PHROG	phrog_371	major head protein	head and packaging
UHGV-0173597_39	UniRef90	UniRef90_A0A8F2JBL2	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0173597_39	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0173597_39	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0173597_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0173597_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173597_40	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0173597_40	UniRef90	UniRef90_UPI001105ADB4	PBSX family phage terminase large subunit	NA
UHGV-0173597_40	eggNOG-mapper	1226322.HMPREF1545_03843	phage Terminase large subunit	NA
UHGV-0173597_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0173597_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0173597_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173597_40	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0173597_42	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0173597_42	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-0173597_42	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0173597_43	PHROG	phrog_156	portal protein	head and packaging
UHGV-0173597_43	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0173597_43	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0173597_44	eggNOG-mapper	1203606.HMPREF1526_02741	NA	NA