UHGV-0173630

Genome information

Genome length 42,765 bps

CDS count 72

Completeness 99.90% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173630
vOTU ID	vOTU-007617
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580448
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.05
Jumbo phage	No

Genome content
Genome length	42,765 bps
GC content	34.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	89.75%
Average CDS length	536.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173630_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0173630_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173630_1	UniRef90	UniRef90_UPI00073F2BD4	NA	NA
UHGV-0173630_1	eggNOG-mapper	491915.Aflv_0659	HNH nucleases	NA
UHGV-0173630_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0173630_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0173630_3	UniRef90	UniRef90_A0A3E4M7F4	Terminase	NA
UHGV-0173630_3	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0173630_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0173630_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0173630_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0173630_3	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0173630_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0173630_4	UniRef90	UniRef90_A0A6B4T7D9	Phage portal protein	NA
UHGV-0173630_4	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0173630_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0173630_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0173630_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0173630_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0173630_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0173630_5	UniRef90	UniRef90_A0A7U4LNK5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0173630_5	eggNOG-mapper	1295642.H839_15963	Serine dehydrogenase proteinase	NA
UHGV-0173630_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0173630_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0173630_5	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0173630_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0173630_6	UniRef90	UniRef90_UPI00199EEC02	phage major capsid protein	NA
UHGV-0173630_6	eggNOG-mapper	864178.E2ELI5_9CAUD	peptidase activity	NA
UHGV-0173630_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0173630_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0173630_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0173630_7	PHROG	phrog_749	NA	unknown function
UHGV-0173630_7	UniRef90	UniRef90_A0A396SIZ8	Phage gp6-like head-tail connector protein	NA
UHGV-0173630_7	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-0173630_9	eggNOG-mapper	663278.Ethha_1842	NA	NA
UHGV-0173630_11	PHROG	phrog_88	major tail protein	tail
UHGV-0173630_11	UniRef90	UniRef90_UPI0011DDC47F	phage tail protein	NA
UHGV-0173630_11	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-0173630_11	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0173630_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0173630_11	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0173630_12	PHROG	phrog_11037	NA	unknown function
UHGV-0173630_12	UniRef90	UniRef90_A0A1T4LEQ5	SH3b domain-containing protein	NA
UHGV-0173630_12	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0173630_12	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173630_13	PHROG	phrog_881	holin	lysis
UHGV-0173630_13	UniRef90	UniRef90_UPI0018A8FD4D	phage holin	NA
UHGV-0173630_13	eggNOG-mapper	1437603.BMON_0122	Putative phage holin Dp-1	NA
UHGV-0173630_13	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0173630_13	Structural annotation	PF16938	NA	NA
UHGV-0173630_16	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0173630_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0173630_16	UniRef90	UniRef90_A0A352DNT9	Phage tail tape measure protein	NA
UHGV-0173630_16	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-0173630_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0173630_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0173630_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0173630_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0173630_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0173630_17	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0173630_17	eggNOG-mapper	585506.HMPREF0877_0163	tail component	NA
UHGV-0173630_17	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0173630_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0173630_17	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0173630_18	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0173630_18	UniRef90	UniRef90_A0A7G9G6Y3	Phage tail protein	NA
UHGV-0173630_18	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0173630_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173630_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0173630_18	COG	COG4926	Phage-related protein	NA
UHGV-0173630_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0173630_20	PHROG	phrog_13589	NA	unknown function
UHGV-0173630_20	eggNOG-mapper	1232428.CAVO010000002_gene2342	ATPase involved in DNA repair	NA
UHGV-0173630_20	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0173630_21	eggNOG-mapper	411470.RUMGNA_00117	NA	NA
UHGV-0173630_21	COG	COG4926	Phage-related protein	NA
UHGV-0173630_21	Structural annotation	PF03422, NF033675	NA	NA
UHGV-0173630_22	PHROG	phrog_372	tail protein	tail
UHGV-0173630_22	UniRef90	UniRef90_A0A4D6B6Q6	Capsid and scaffold protein	NA
UHGV-0173630_22	eggNOG-mapper	764299.STRIC_1425	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0173630_22	Pfam	PF05895	NA	DUF859
UHGV-0173630_22	COG	COG4675	Phage tail collar domain	NA
UHGV-0173630_22	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0173630_23	Structural annotation	PF10618	NA	NA
UHGV-0173630_24	Structural annotation	PF20787	NA	NA
UHGV-0173630_25	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0173630_27	PHROG	phrog_22984	NA	unknown function
UHGV-0173630_29	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0173630_31	KOfam	K14059	int; integrase	NA
UHGV-0173630_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0173630_31	UniRef90	UniRef90_UPI00041838CC	site-specific integrase	NA
UHGV-0173630_31	eggNOG-mapper	1123263.AUKY01000012_gene1957	Pfam:Integrase_AP2	NA
UHGV-0173630_31	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0173630_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173630_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173630_31	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0173630_32	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0173630_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173630_32	UniRef90	UniRef90_F0H1R6	DNA-binding helix-turn-helix protein	NA
UHGV-0173630_32	eggNOG-mapper	526218.Sterm_3926	sequence-specific DNA binding	NA
UHGV-0173630_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173630_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173630_32	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0173630_33	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0173630_37	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0173630_37	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0173630_37	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0173630_37	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0173630_38	PHROG	phrog_9804	NA	unknown function
UHGV-0173630_38	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0173630_38	Structural annotation	PF11417	NA	NA
UHGV-0173630_39	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0173630_39	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0173630_39	UniRef90	UniRef90_UPI001A9C69F1	dUTP diphosphatase	NA
UHGV-0173630_39	eggNOG-mapper	596315.HMPREF0634_0877	dUTPase	NA
UHGV-0173630_39	Pfam	PF00692	dUTPase	dUTPase
UHGV-0173630_39	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0173630_39	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0173630_40	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0173630_40	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0173630_40	UniRef90	UniRef90_A0A412KF70	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0173630_40	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0173630_40	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0173630_40	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0173630_40	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0173630_40	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0173630_40	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0173630_41	PHROG	phrog_17284	NA	unknown function
UHGV-0173630_41	UniRef90	UniRef90_A0A1I0BHE8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0173630_41	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-0173630_41	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0173630_41	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0173630_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0173630_44	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0173630_44	Structural annotation	PF18300, NF033216, COG4568	NA	NA
UHGV-0173630_45	PHROG	phrog_10714	NA	unknown function
UHGV-0173630_45	eggNOG-mapper	428127.EUBDOL_01518	NA	NA
UHGV-0173630_52	PHROG	phrog_918	NA	unknown function
UHGV-0173630_52	UniRef90	UniRef90_UPI001D0B68F4	NA	NA
UHGV-0173630_52	eggNOG-mapper	411473.RUMCAL_00361	NA	NA
UHGV-0173630_52	Pfam	PF19791	NA	DUF6275
UHGV-0173630_52	Structural annotation	PF19791	NA	NA
UHGV-0173630_53	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0173630_53	UniRef90	UniRef90_A0A0J8Z1B9	Prophage pi1 protein 29	NA
UHGV-0173630_53	eggNOG-mapper	272623.L62008	NA	NA
UHGV-0173630_57	PHROG	phrog_3878	NA	unknown function
UHGV-0173630_59	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0173630_59	PHROG	phrog_216	integrase	integration and excision
UHGV-0173630_59	UniRef90	UniRef90_A0A412PAR7	Tyr recombinase domain-containing protein	NA
UHGV-0173630_59	eggNOG-mapper	706433.HMPREF9430_01277	DNA integration	NA
UHGV-0173630_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173630_59	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173630_59	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0173630_60	PHROG	phrog_236	nucleotide kinase	other
UHGV-0173630_60	UniRef90	UniRef90_A0A1C5MWI7	NA	NA
UHGV-0173630_60	eggNOG-mapper	742733.HMPREF9469_05075	NA	NA
UHGV-0173630_60	Pfam	PF11753	NA	DUF3310
UHGV-0173630_61	Structural annotation	TIGR01636	NA	NA
UHGV-0173630_64	eggNOG-mapper	97139.C824_00678	NA	NA
UHGV-0173630_64	Structural annotation	PF18358, NF037951	NA	NA
UHGV-0173630_66	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0173630_66	eggNOG-mapper	657322.FPR_26770	NA	NA
UHGV-0173630_66	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0173630_69	PHROG	phrog_25027	NA	unknown function
UHGV-0173630_69	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN