UHGV-0173656

Genome information

Genome length 41,919 bps

CDS count 68

Completeness 99.90% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173656
vOTU ID	vOTU-071316
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_586515
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.58
Jumbo phage	No

Genome content
Genome length	41,919 bps
GC content	53.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	91.66%
Average CDS length	569.74 bps
tRNA count	3
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173656_2	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173656_2	UniRef90	UniRef90_A0A2A7B6I3	HNH domain-containing protein	NA
UHGV-0173656_2	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-0173656_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0173656_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0173656_7	Structural annotation	PF04545	NA	NA
UHGV-0173656_8	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0173656_8	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0173656_8	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-0173656_8	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0173656_8	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0173656_8	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0173656_8	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0173656_9	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0173656_11	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0173656_11	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0173656_11	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0173656_11	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0173656_11	Pfam	PF13614	AAA domain	AAA_31
UHGV-0173656_11	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0173656_11	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0173656_12	PHROG	phrog_6969	NA	unknown function
UHGV-0173656_12	UniRef90	UniRef90_A0A2G9FIX8	Phg_2220_C domain-containing protein	NA
UHGV-0173656_12	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0173656_12	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0173656_12	Structural annotation	PF04182, MF_01819, TIGR04176, COG5625	NA	NA
UHGV-0173656_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173656_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173656_13	UniRef90	UniRef90_A0A2A7B6R5	Single-stranded DNA-binding protein	NA
UHGV-0173656_13	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0173656_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173656_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173656_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173656_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173656_13	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0173656_14	PHROG	phrog_7566	NA	unknown function
UHGV-0173656_14	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0173656_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0173656_16	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0173656_16	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0173656_17	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0173656_20	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0173656_20	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0173656_27	UniRef90	UniRef90_UPI000BEF0F65	helix-turn-helix transcriptional regulator	NA
UHGV-0173656_27	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0173656_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173656_28	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0173656_28	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0173656_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173656_28	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0173656_28	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0173656_30	Structural annotation	PF06776, COG5342	NA	NA
UHGV-0173656_31	eggNOG-mapper	1280686.AUKE01000006_gene311	nuclear chromosome segregation	NA
UHGV-0173656_31	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0173656_31	Structural annotation	COG5342	NA	NA
UHGV-0173656_34	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0173656_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173656_34	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0173656_35	KOfam	K14059	int; integrase	NA
UHGV-0173656_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0173656_35	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0173656_35	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0173656_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173656_35	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173656_35	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0173656_36	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0173656_36	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0173656_37	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0173656_38	PHROG	phrog_16490	NA	unknown function
UHGV-0173656_38	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0173656_39	PHROG	phrog_22984	NA	unknown function
UHGV-0173656_42	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173656_42	eggNOG-mapper	927704.SELR_12480	NA	NA
UHGV-0173656_42	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0173656_43	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0173656_43	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0173656_43	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0173656_45	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0173656_48	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0173656_48	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0173656_48	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0173656_48	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0173656_48	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0173656_48	Structural annotation	PF10651	NA	NA
UHGV-0173656_49	PHROG	phrog_263	holin	lysis
UHGV-0173656_49	UniRef90	UniRef90_A0A329UCA4	Phage holin	NA
UHGV-0173656_49	eggNOG-mapper	1121344.JHZO01000003_gene952	SPP1 phage holin	NA
UHGV-0173656_49	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0173656_49	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0173656_49	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0173656_50	PHROG	phrog_1863	NA	unknown function
UHGV-0173656_50	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0173656_51	KOfam	K07273	acm; lysozyme	NA
UHGV-0173656_51	PHROG	phrog_291	endolysin	lysis
UHGV-0173656_51	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0173656_51	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0173656_51	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0173656_51	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0173656_51	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0173656_52	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0173656_52	eggNOG-mapper	1423816.BACQ01000031_gene1331	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0173656_52	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0173656_54	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0173656_54	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0173656_54	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0173656_54	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173656_54	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0173656_54	COG	COG4926	Phage-related protein	NA
UHGV-0173656_54	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0173656_55	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0173656_55	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0173656_55	eggNOG-mapper	1123315.AUIP01000014_gene1961	tail component	NA
UHGV-0173656_55	COG	COG4722	Phage-related protein YomH	NA
UHGV-0173656_55	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0173656_56	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0173656_56	UniRef90	UniRef90_A0A2A7B6K1	TMP_3 domain-containing protein	NA
UHGV-0173656_56	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0173656_56	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0173656_56	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0173656_56	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0173656_56	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0173656_59	PHROG	phrog_88	major tail protein	tail
UHGV-0173656_59	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0173656_59	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0173656_59	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0173656_59	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0173656_60	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0173656_60	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0173656_60	Structural annotation	TIGR01725	NA	NA
UHGV-0173656_61	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0173656_61	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0173656_62	PHROG	phrog_19734	NA	unknown function
UHGV-0173656_62	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0173656_62	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0173656_63	PHROG	phrog_749	NA	unknown function
UHGV-0173656_63	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0173656_64	PHROG	phrog_10	major head protein	head and packaging
UHGV-0173656_64	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0173656_64	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0173656_64	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0173656_64	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0173656_64	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0173656_64	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0173656_64	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0173656_65	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0173656_65	PHROG	phrog_133	head maturation protease	head and packaging
UHGV-0173656_65	UniRef90	UniRef90_UPI001C10F40E	Clp protease ClpP	NA
UHGV-0173656_65	eggNOG-mapper	1121866.AUGK01000006_gene879	Clp protease	NA
UHGV-0173656_65	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0173656_65	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0173656_65	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0173656_66	PHROG	phrog_12	portal protein	head and packaging
UHGV-0173656_66	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0173656_66	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0173656_66	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0173656_66	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0173656_66	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0173656_66	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0173656_67	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0173656_67	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0173656_67	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0173656_67	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0173656_67	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0173656_67	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0173656_68	PHROG	phrog_13845	NA	unknown function
UHGV-0173656_68	eggNOG-mapper	508419.F8J158_9CAUD	NA	NA
UHGV-0173656_68	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0173656_68	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA