UHGV-0173699

Genome information

Genome length 29,946 bps

CDS count 55

Completeness 53.61% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173699
vOTU ID	vOTU-022468
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_569452
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.5
Jumbo phage	No

Genome content
Genome length	29,946 bps
GC content	47.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	86.01%
Average CDS length	471.82 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173699_1	eggNOG-mapper	445970.ALIPUT_01650	NA	NA
UHGV-0173699_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0173699_2	eggNOG-mapper	585543.HMPREF0969_03351	NA	NA
UHGV-0173699_4	PHROG	phrog_14600	NA	unknown function
UHGV-0173699_4	eggNOG-mapper	445970.ALIPUT_01653	NA	NA
UHGV-0173699_4	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0173699_5	PHROG	phrog_5597	NA	unknown function
UHGV-0173699_5	eggNOG-mapper	445970.ALIPUT_01654	NA	NA
UHGV-0173699_5	Structural annotation	PF16807, TIGR01633	NA	NA
UHGV-0173699_6	PHROG	phrog_16482	NA	unknown function
UHGV-0173699_6	eggNOG-mapper	411477.PARMER_02036	NA	NA
UHGV-0173699_6	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0173699_7	Pfam	PF20449	NA	DUF6706
UHGV-0173699_7	Structural annotation	PF20449	NA	NA
UHGV-0173699_8	PHROG	phrog_29	major head protein	head and packaging
UHGV-0173699_8	UniRef90	UniRef90_A0A5B5VID5	Major capsid protein E	NA
UHGV-0173699_8	eggNOG-mapper	445970.ALIPUT_00704	NA	NA
UHGV-0173699_8	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0173699_8	Structural annotation	PF03864, MF_04133, NF041162, COG4834	NA	NA
UHGV-0173699_9	Structural annotation	PF21430, NF009633	NA	NA
UHGV-0173699_10	PHROG	phrog_5824	NA	unknown function
UHGV-0173699_10	eggNOG-mapper	445970.ALIPUT_01659	NA	NA
UHGV-0173699_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-0173699_11	UniRef90	UniRef90_UPI00189D88D6	phage portal protein	NA
UHGV-0173699_11	eggNOG-mapper	445970.ALIPUT_01192	phage portal protein, SPP1	NA
UHGV-0173699_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0173699_12	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0173699_12	UniRef90	UniRef90_A0A5B5VJH5	Phage terminase large subunit	NA
UHGV-0173699_12	eggNOG-mapper	445970.ALIPUT_01193	domain protein	NA
UHGV-0173699_12	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0173699_12	COG	COG5410	NA	NA
UHGV-0173699_12	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0173699_13	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0173699_13	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0173699_13	UniRef90	UniRef90_UPI0015BC56D4	terminase small subunit	NA
UHGV-0173699_13	eggNOG-mapper	445970.ALIPUT_01662	COG NOG24226 non supervised orthologous group	NA
UHGV-0173699_13	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0173699_13	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0173699_13	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0173699_14	PHROG	phrog_5783	NA	unknown function
UHGV-0173699_14	UniRef90	UniRef90_UPI001E2C6287	NYN domain-containing protein	NA
UHGV-0173699_14	eggNOG-mapper	702438.HMPREF9431_02012	NYN domain	NA
UHGV-0173699_14	Pfam	PF01936	NYN domain	NYN
UHGV-0173699_14	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0173699_17	UniRef90	UniRef90_A0A646HMC6	Helix-turn-helix transcriptional regulator	NA
UHGV-0173699_17	eggNOG-mapper	1492737.FEM08_04020	Peptidase S24-like	NA
UHGV-0173699_17	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0173699_17	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0173699_18	PHROG	phrog_28198	NA	unknown function
UHGV-0173699_21	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0173699_21	UniRef90	UniRef90_A0A5B5VJJ0	Helix-turn-helix transcriptional regulator	NA
UHGV-0173699_21	eggNOG-mapper	272559.BF9343_2244	helix_turn_helix, Lux Regulon	NA
UHGV-0173699_21	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0173699_21	Structural annotation	PF00196, MF_00674, COG2771	NA	NA
UHGV-0173699_22	PHROG	phrog_32789	NA	unknown function
UHGV-0173699_22	UniRef90	UniRef90_UPI0018736416	acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase	NA
UHGV-0173699_22	Structural annotation	COG0663	NA	NA
UHGV-0173699_25	UniRef90	UniRef90_UPI0018A05105	zinc-finger domain-containing protein	NA
UHGV-0173699_28	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173699_28	UniRef90	UniRef90_UPI0016270003	ERF family protein	NA
UHGV-0173699_28	eggNOG-mapper	1327970.R9ZVT8_9CAUD	ERF superfamily	NA
UHGV-0173699_28	Pfam	PF04404	ERF superfamily	ERF
UHGV-0173699_28	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0173699_30	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-0173699_31	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173699_31	UniRef90	UniRef90_UPI001BA4D9F5	NUMOD4 domain-containing protein	NA
UHGV-0173699_31	eggNOG-mapper	764299.STRIC_2124	NUMOD4 motif	NA
UHGV-0173699_31	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0173699_31	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0173699_31	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0173699_31	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0173699_32	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0173699_32	eggNOG-mapper	1121100.JCM6294_522	NA	NA
UHGV-0173699_32	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0173699_33	PHROG	phrog_23776	NA	unknown function
UHGV-0173699_33	eggNOG-mapper	445970.ALIPUT_01604	NA	NA
UHGV-0173699_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0173699_33	Structural annotation	PF01978, MF_01819, NF041230, COG3355	NA	NA
UHGV-0173699_34	PHROG	phrog_29547	NA	unknown function
UHGV-0173699_34	eggNOG-mapper	619693.HMPREF6745_2494	NA	NA
UHGV-0173699_34	Pfam	PF20338	NA	DUF6633
UHGV-0173699_34	Structural annotation	PF20338	NA	NA
UHGV-0173699_35	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0173699_35	eggNOG-mapper	520709.F985_01897	NA	NA
UHGV-0173699_35	Structural annotation	PF02075, MF_00034, NF000711, COG2410	NA	NA
UHGV-0173699_36	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0173699_36	UniRef90	UniRef90_E4M9U7	Methyltransf_11 domain-containing protein	NA
UHGV-0173699_36	eggNOG-mapper	908612.HMPREF9720_2109	methyltransferase	NA
UHGV-0173699_36	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0173699_36	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0173699_36	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0173699_36	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0173699_40	Structural annotation	NF011227	NA	NA
UHGV-0173699_45	PHROG	phrog_8684	NA	unknown function
UHGV-0173699_45	UniRef90	UniRef90_A0A1Y3VJP0	YopX domain-containing protein	NA
UHGV-0173699_45	eggNOG-mapper	40522.A8ASP1_BPA50	YopX protein	NA
UHGV-0173699_45	Pfam	PF09643	YopX protein	YopX
UHGV-0173699_45	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0173699_45	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0173699_46	eggNOG-mapper	742767.HMPREF9456_03386	NA	NA
UHGV-0173699_50	PHROG	phrog_8684	NA	unknown function
UHGV-0173699_50	UniRef90	UniRef90_UPI000A5AC279	YopX family protein	NA
UHGV-0173699_50	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0173699_50	Pfam	PF09643	YopX protein	YopX
UHGV-0173699_50	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0173699_50	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0173699_51	PHROG	phrog_874	NA	unknown function
UHGV-0173699_51	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0173699_51	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0173699_55	UniRef90	UniRef90_A0A5B5VMX3	Helix-turn-helix domain-containing protein	NA
UHGV-0173699_55	eggNOG-mapper	1347393.HG726021_gene520	Helix-turn-helix domain	NA
UHGV-0173699_55	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0173699_55	COG	COG0789	DNA-binding transcriptional regulator, MerR family	NA