UHGV-0173761

Genome information

Genome length 45,567 bps

CDS count 76

Completeness 72.98% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173761
vOTU ID	vOTU-028702
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581386
BioSample	SAMN09781751
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.91
Jumbo phage	No

Genome content
Genome length	45,567 bps
GC content	46.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	92.53%
Average CDS length	556.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173761_1	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0173761_6	Structural annotation	PF12614	NA	NA
UHGV-0173761_7	PHROG	phrog_6721	NA	unknown function
UHGV-0173761_7	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-0173761_7	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0173761_10	Structural annotation	PF04319, MF_01549, TIGR00405, COG2139	NA	NA
UHGV-0173761_11	Structural annotation	PF10750	NA	NA
UHGV-0173761_12	PHROG	phrog_3878	NA	unknown function
UHGV-0173761_13	PHROG	phrog_19852	NA	unknown function
UHGV-0173761_13	eggNOG-mapper	742740.HMPREF9474_02297	NA	NA
UHGV-0173761_19	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0173761_19	UniRef90	UniRef90_A0A4Q5C8W0	Helicase ATP-binding domain-containing protein	NA
UHGV-0173761_19	eggNOG-mapper	742733.HMPREF9469_05062	Helicase conserved C-terminal domain	NA
UHGV-0173761_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0173761_19	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-0173761_21	UniRef90	UniRef90_A0A076PE73	Type I restriction-modification system methyltransferase subunit	NA
UHGV-0173761_21	eggNOG-mapper	443144.GM21_0785	NA	NA
UHGV-0173761_24	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173761_24	eggNOG-mapper	691965.D4P7I8_9CAUD	NA	NA
UHGV-0173761_24	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0173761_25	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0173761_25	UniRef90	UniRef90_A0A372V5Y1	SF3 helicase domain-containing protein	NA
UHGV-0173761_25	eggNOG-mapper	665956.HMPREF1032_00647	DNA polymerase type-B family	NA
UHGV-0173761_25	Pfam	PF19263	NA	DUF5906
UHGV-0173761_25	Structural annotation	PF00136, PF05272, PF10991, PF09250, MF_04100, MF_00016, NF011296, TIGR00592, COG3378, COG0417	NA	NA
UHGV-0173761_27	PHROG	phrog_4678	NA	unknown function
UHGV-0173761_27	eggNOG-mapper	411460.RUMTOR_02033	NA	NA
UHGV-0173761_28	PHROG	phrog_4695	NA	unknown function
UHGV-0173761_28	eggNOG-mapper	665950.HMPREF1025_01953	NA	NA
UHGV-0173761_29	PHROG	phrog_14968	NA	unknown function
UHGV-0173761_29	UniRef90	UniRef90_A0A3A9JBK4	Histidine kinase	NA
UHGV-0173761_29	eggNOG-mapper	411460.RUMTOR_02031	NA	NA
UHGV-0173761_31	PHROG	phrog_2152	NA	unknown function
UHGV-0173761_31	UniRef90	UniRef90_UPI00156DA7B3	NA	NA
UHGV-0173761_31	eggNOG-mapper	411460.RUMTOR_02029	NA	NA
UHGV-0173761_31	Pfam	PF19880	NA	DUF6353
UHGV-0173761_31	Structural annotation	PF19880	NA	NA
UHGV-0173761_32	PHROG	phrog_1485	NA	unknown function
UHGV-0173761_32	UniRef90	UniRef90_A0A1U7M493	NA	NA
UHGV-0173761_32	eggNOG-mapper	1444310.JANV01000096_gene3245	NA	NA
UHGV-0173761_32	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0173761_32	Structural annotation	PF07659	NA	NA
UHGV-0173761_33	PHROG	phrog_4079	NA	unknown function
UHGV-0173761_33	eggNOG-mapper	742740.HMPREF9474_02312	NA	NA
UHGV-0173761_34	PHROG	phrog_15567	NA	unknown function
UHGV-0173761_34	eggNOG-mapper	478749.BRYFOR_08567	NA	NA
UHGV-0173761_35	PHROG	phrog_4079	NA	unknown function
UHGV-0173761_35	eggNOG-mapper	428125.CLOLEP_01365	NA	NA
UHGV-0173761_35	Structural annotation	PF19880	NA	NA
UHGV-0173761_36	eggNOG-mapper	1453496.AT03_13425	NA	NA
UHGV-0173761_38	PHROG	phrog_2152	NA	unknown function
UHGV-0173761_38	UniRef90	UniRef90_UPI0019566411	NA	NA
UHGV-0173761_38	eggNOG-mapper	742740.HMPREF9474_02314	NA	NA
UHGV-0173761_38	Pfam	PF19880	NA	DUF6353
UHGV-0173761_38	Structural annotation	PF19880	NA	NA
UHGV-0173761_43	PHROG	phrog_2152	NA	unknown function
UHGV-0173761_43	UniRef90	UniRef90_UPI0011CA98EE	NA	NA
UHGV-0173761_43	eggNOG-mapper	742733.HMPREF9469_05079	NA	NA
UHGV-0173761_43	Pfam	PF19880	NA	DUF6353
UHGV-0173761_43	Structural annotation	PF19880	NA	NA
UHGV-0173761_48	PHROG	phrog_17256	NA	unknown function
UHGV-0173761_48	eggNOG-mapper	428125.CLOLEP_01353	NA	NA
UHGV-0173761_49	Pfam	PF20234	NA	DUF6591
UHGV-0173761_49	Structural annotation	PF20234, PF09624	NA	NA
UHGV-0173761_50	PHROG	phrog_15866	NA	unknown function
UHGV-0173761_51	PHROG	phrog_15309	NA	unknown function
UHGV-0173761_51	eggNOG-mapper	665956.HMPREF1032_00626	NA	NA
UHGV-0173761_55	PHROG	phrog_11237	NA	unknown function
UHGV-0173761_55	eggNOG-mapper	478749.BRYFOR_08581	NA	NA
UHGV-0173761_56	PHROG	phrog_6058	NA	unknown function
UHGV-0173761_56	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0173761_56	eggNOG-mapper	411460.RUMTOR_02008	NA	NA
UHGV-0173761_57	KOfam	K14059	int; integrase	NA
UHGV-0173761_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0173761_57	UniRef90	UniRef90_A0A898FVV0	Tyrosine-type recombinase/integrase	NA
UHGV-0173761_57	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0173761_57	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0173761_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173761_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173761_57	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0173761_58	PHROG	phrog_881	holin	lysis
UHGV-0173761_58	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0173761_58	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0173761_58	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0173761_58	Structural annotation	PF16938	NA	NA
UHGV-0173761_59	PHROG	phrog_4105	NA	unknown function
UHGV-0173761_59	UniRef90	UniRef90_A0A7M4BNX2	Phage holin	NA
UHGV-0173761_59	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0173761_60	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0173761_60	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0173761_62	PHROG	phrog_20016	NA	unknown function
UHGV-0173761_62	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0173761_63	PHROG	phrog_16490	NA	unknown function
UHGV-0173761_63	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0173761_67	PHROG	phrog_17147	NA	unknown function
UHGV-0173761_67	eggNOG-mapper	411459.RUMOBE_01720	NA	NA
UHGV-0173761_68	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0173761_68	Structural annotation	PF19714	NA	NA
UHGV-0173761_69	Structural annotation	NF033819	NA	NA
UHGV-0173761_70	PHROG	phrog_134	NA	unknown function
UHGV-0173761_70	eggNOG-mapper	697281.Mahau_0596	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0173761_70	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0173761_70	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0173761_72	UniRef90	UniRef90_A0A2V2GLK0	NA	NA
UHGV-0173761_72	eggNOG-mapper	693746.OBV_22720	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0173761_72	Pfam	PF19789	NA	DUF6273
UHGV-0173761_72	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0173761_72	Structural annotation	PF19789	NA	NA
UHGV-0173761_73	PHROG	phrog_1220	head protein	head and packaging
UHGV-0173761_73	UniRef90	UniRef90_Q5L2K4	Phage-related protein	NA
UHGV-0173761_73	eggNOG-mapper	428125.CLOLEP_01425	COG NOG18825 non supervised orthologous group	NA
UHGV-0173761_73	Structural annotation	PF20747	NA	NA
UHGV-0173761_74	PHROG	phrog_538	minor tail protein	tail
UHGV-0173761_74	UniRef90	UniRef90_UPI0011DE0073	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0173761_74	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0173761_74	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0173761_74	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0173761_75	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0173761_75	UniRef90	UniRef90_UPI0011DCCBB1	phage tail family protein	NA
UHGV-0173761_75	eggNOG-mapper	742733.HMPREF9469_05019	Phage tail protein	NA
UHGV-0173761_75	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0173761_75	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0173761_76	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0173761_76	UniRef90	UniRef90_A0A3A9ITG5	Phage tail tape measure protein	NA
UHGV-0173761_76	eggNOG-mapper	428125.CLOLEP_01422	phage tail tape measure protein	NA
UHGV-0173761_76	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0173761_76	COG	COG5412	Phage-related protein	NA