UHGV-0173780

Genome information

Genome length 45,446 bps

CDS count 65

Completeness 91.98% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173780
vOTU ID	vOTU-060398
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588512
BioSample	SAMN09781748
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.18
Jumbo phage	No

Genome content
Genome length	45,446 bps
GC content	46.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	89.77%
Average CDS length	632.82 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173780_3	PHROG	phrog_6160	NA	unknown function
UHGV-0173780_5	PHROG	phrog_5867	endolysin	lysis
UHGV-0173780_5	UniRef90	UniRef90_A0A349YJ02	N-acetylmuramoyl-L-alanine amidase (Fragment)	NA
UHGV-0173780_5	eggNOG-mapper	592028.GCWU000321_01397	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173780_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0173780_5	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0173780_5	Structural annotation	MF_04111	NA	NA
UHGV-0173780_7	PHROG	phrog_4105	NA	unknown function
UHGV-0173780_7	eggNOG-mapper	742743.HMPREF9453_00545	NA	NA
UHGV-0173780_8	eggNOG-mapper	397290.C810_01330	NA	NA
UHGV-0173780_9	PHROG	phrog_16490	NA	unknown function
UHGV-0173780_9	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0173780_9	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0173780_11	Structural annotation	PF04545, MF_00674, NF001073, COG1342	NA	NA
UHGV-0173780_12	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0173780_15	PHROG	phrog_32639	NA	unknown function
UHGV-0173780_15	Structural annotation	PF21611	NA	NA
UHGV-0173780_16	KOfam	K14059	int; integrase	NA
UHGV-0173780_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0173780_16	UniRef90	UniRef90_A0A3B9DV66	Recombinase XerC	NA
UHGV-0173780_16	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0173780_16	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0173780_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173780_16	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0173780_16	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0173780_17	eggNOG-mapper	742743.HMPREF9453_00547	tail collar domain protein	NA
UHGV-0173780_17	COG	COG4675	Phage tail collar domain	NA
UHGV-0173780_18	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0173780_18	UniRef90	UniRef90_A0A349YR63	Phage-tail_3 domain-containing protein (Fragment)	NA
UHGV-0173780_18	eggNOG-mapper	1123489.AUAN01000010_gene347	cellulase activity	NA
UHGV-0173780_18	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0173780_18	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0173780_18	COG	COG1511	NA	NA
UHGV-0173780_18	Structural annotation	PF13550, PF00041, PF16323, NF040662, COG4733	NA	NA
UHGV-0173780_19	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0173780_19	PHROG	phrog_329	minor tail protein	tail
UHGV-0173780_19	UniRef90	UniRef90_A0A380N793	NlpC/P60 family	NA
UHGV-0173780_19	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0173780_19	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0173780_19	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0173780_19	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0173780_20	PHROG	phrog_18	minor tail protein	tail
UHGV-0173780_20	UniRef90	UniRef90_UPI000482FA99	NA	NA
UHGV-0173780_20	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0173780_20	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0173780_20	COG	COG4672	Phage tail protein	NA
UHGV-0173780_20	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0173780_21	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-0173780_21	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0173780_22	PHROG	phrog_30973	NA	unknown function
UHGV-0173780_22	UniRef90	UniRef90_E4LA45	NlpC/P60 domain-containing protein	NA
UHGV-0173780_22	eggNOG-mapper	910314.HMPREF9220_0612	nuclear chromosome segregation	NA
UHGV-0173780_22	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0173780_22	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0173780_24	PHROG	phrog_290	minor tail protein	tail
UHGV-0173780_24	UniRef90	UniRef90_UPI0018C4C4AD	phage tail tube protein	NA
UHGV-0173780_24	eggNOG-mapper	910314.HMPREF9220_0614	NA	NA
UHGV-0173780_24	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0173780_24	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0173780_25	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0173780_26	eggNOG-mapper	910314.HMPREF9220_0616	NA	NA
UHGV-0173780_26	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0173780_27	Structural annotation	PF13856, COG5614	NA	NA
UHGV-0173780_28	PHROG	phrog_122	head decoration	head and packaging
UHGV-0173780_28	UniRef90	UniRef90_A0A316S7V6	DNA breaking-rejoining protein	NA
UHGV-0173780_28	eggNOG-mapper	716541.ECL_01703	NA	NA
UHGV-0173780_28	Pfam	PF09956	NA	DUF2190
UHGV-0173780_28	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0173780_28	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0173780_29	KOfam	K06904	NA	NA
UHGV-0173780_29	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0173780_29	UniRef90	UniRef90_E4LA52	Caudovirus prohead protease	NA
UHGV-0173780_29	eggNOG-mapper	910314.HMPREF9220_0619	Caudovirus prohead protease	NA
UHGV-0173780_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0173780_29	COG	COG3087	Cell division protein FtsN	NA
UHGV-0173780_29	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0173780_30	PHROG	phrog_21	portal protein	head and packaging
UHGV-0173780_30	UniRef90	UniRef90_E4LA53	Phage portal protein, lambda family	NA
UHGV-0173780_30	eggNOG-mapper	910314.HMPREF9220_0620	Phage portal protein, lambda family	NA
UHGV-0173780_30	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0173780_30	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0173780_30	COG	COG5511	Phage capsid protein	NA
UHGV-0173780_30	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0173780_32	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0173780_32	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0173780_32	UniRef90	UniRef90_E4LA55	Phage terminase large subunit (GpA)	NA
UHGV-0173780_32	eggNOG-mapper	910314.HMPREF9220_0622	Phage terminase large subunit (GpA)	NA
UHGV-0173780_32	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0173780_32	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0173780_32	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0173780_32	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0173780_33	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0173780_33	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0173780_35	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0173780_36	PHROG	phrog_236	nucleotide kinase	other
UHGV-0173780_36	eggNOG-mapper	889876.E2GLY2_9CAUD	NA	NA
UHGV-0173780_36	Pfam	PF11753	NA	DUF3310
UHGV-0173780_38	Pfam	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase	PRA-PH
UHGV-0173780_38	Structural annotation	PF01503, MF_01020, NF001613, COG0140	NA	NA
UHGV-0173780_39	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0173780_39	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0173780_39	UniRef90	UniRef90_A0A336QRR1	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0173780_39	eggNOG-mapper	469617.FUAG_00816	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0173780_39	PADLOC	SspD_00001	SspD	SSP
UHGV-0173780_39	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0173780_39	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0173780_39	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0173780_42	Structural annotation	PF02888	NA	NA
UHGV-0173780_46	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0173780_46	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0173780_46	UniRef90	UniRef90_UPI00164D401A	DNA cytosine methyltransferase	NA
UHGV-0173780_46	eggNOG-mapper	585503.HMPREF7545_1724	Cytosine-specific methyltransferase	NA
UHGV-0173780_46	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0173780_46	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0173780_46	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0173780_47	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0173780_47	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0173780_47	UniRef90	UniRef90_UPI001E638E1B	DNA cytosine methyltransferase	NA
UHGV-0173780_47	eggNOG-mapper	585503.HMPREF7545_1724	Cytosine-specific methyltransferase	NA
UHGV-0173780_47	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0173780_47	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0173780_47	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0173780_47	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0173780_47	Structural annotation	PF00145, MF_00607, TIGR00675, COG0270	NA	NA
UHGV-0173780_54	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0173780_54	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0173780_54	UniRef90	UniRef90_R7PP96	Deoxyuridine 5`-triphosphate nucleotidohydrolase	NA
UHGV-0173780_54	eggNOG-mapper	1111454.HMPREF1250_1714	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0173780_54	Pfam	PF00692	dUTPase	dUTPase
UHGV-0173780_54	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0173780_54	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0173780_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173780_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173780_56	UniRef90	UniRef90_W1UM84	Single-stranded DNA-binding protein	NA
UHGV-0173780_56	eggNOG-mapper	864563.HMPREF9166_1268	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0173780_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173780_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173780_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173780_56	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0173780_57	eggNOG-mapper	1273103.NM10_01154	NA	NA
UHGV-0173780_57	Structural annotation	PF11417	NA	NA
UHGV-0173780_58	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0173780_58	UniRef90	UniRef90_UPI00073EF250	replication initiator protein A	NA
UHGV-0173780_58	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0173780_58	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0173780_59	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0173780_59	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0173780_59	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0173780_59	Structural annotation	PF05772	NA	NA
UHGV-0173780_61	PHROG	phrog_14367	NA	unknown function
UHGV-0173780_61	UniRef90	UniRef90_A0A1G5VJC5	LysM domain-containing protein	NA
UHGV-0173780_61	eggNOG-mapper	1380354.JIAN01000007_gene84	PFAM Peptidoglycan-binding lysin domain	NA
UHGV-0173780_61	COG	COG1388	LysM repeat	NA
UHGV-0173780_61	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0173780_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173780_64	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0173780_64	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0173780_64	UniRef90	UniRef90_A0A349YNZ0	LexA family transcriptional regulator	NA
UHGV-0173780_64	eggNOG-mapper	1111454.HMPREF1250_0095	Peptidase S24-like	NA
UHGV-0173780_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173780_64	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0173780_64	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0173780_64	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0173780_65	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0173780_65	PHROG	phrog_95	integrase	integration and excision
UHGV-0173780_65	UniRef90	UniRef90_A0A349YNY9	Recombinase family protein	NA
UHGV-0173780_65	eggNOG-mapper	706434.HMPREF9429_00560	overlaps another CDS with the same product name	NA
UHGV-0173780_65	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0173780_65	Pfam	PF07508	Recombinase	Recombinase
UHGV-0173780_65	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0173780_65	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0173780_65	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA