UHGV-0173783

Genome information

Genome length 30,751 bps

CDS count 56

Completeness 93.04% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173783
vOTU ID	vOTU-060399
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584681
BioSample	SAMN09781790
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.04% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.71
Jumbo phage	No

Genome content
Genome length	30,751 bps
GC content	55.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	94.76%
Average CDS length	526.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173783_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173783_1	UniRef90	UniRef90_A0A0D8IV26	HNH endonuclease	NA
UHGV-0173783_1	eggNOG-mapper	1415774.U728_1257	HNH nucleases	NA
UHGV-0173783_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0173783_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0173783_2	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0173783_2	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0173783_4	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0173783_4	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-0173783_4	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0173783_8	PHROG	phrog_3136	NA	unknown function
UHGV-0173783_8	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0173783_8	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0173783_8	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0173783_8	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0173783_12	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0173783_12	UniRef90	UniRef90_A0A4U8T4F4	Sugar-phosphate nucleotidyltransferase	NA
UHGV-0173783_12	eggNOG-mapper	537971.HCCG_00428	NA	NA
UHGV-0173783_12	Structural annotation	PF05869, MF_00607, NF000468, COG0030	NA	NA
UHGV-0173783_13	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0173783_13	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0173783_13	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0173783_13	eggNOG-mapper	411902.CLOBOL_06768	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0173783_13	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0173783_13	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0173783_13	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0173783_13	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0173783_14	PHROG	phrog_24518	NA	unknown function
UHGV-0173783_14	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0173783_15	PHROG	phrog_824	NA	unknown function
UHGV-0173783_15	UniRef90	UniRef90_A0A6N8GXS9	VRR-NUC domain-containing protein	NA
UHGV-0173783_15	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0173783_15	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0173783_27	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0173783_27	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0173783_27	UniRef90	UniRef90_A0A1Q6RKG1	HTH cro/C1-type domain-containing protein	NA
UHGV-0173783_27	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173783_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173783_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173783_27	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0173783_29	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0173783_30	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0173783_30	UniRef90	UniRef90_A0A3E3K2T1	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0173783_30	eggNOG-mapper	502558.EGYY_24930	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0173783_30	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0173783_30	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0173783_30	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0173783_31	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0173783_31	UniRef90	UniRef90_UPI0019616193	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0173783_31	eggNOG-mapper	397287.C807_03671	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0173783_31	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0173783_31	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0173783_31	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0173783_32	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0173783_32	PHROG	phrog_95	integrase	integration and excision
UHGV-0173783_32	UniRef90	UniRef90_UPI00106696FE	recombinase family protein	NA
UHGV-0173783_32	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-0173783_32	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0173783_32	Pfam	PF07508	Recombinase	Recombinase
UHGV-0173783_32	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0173783_32	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0173783_32	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0173783_33	PHROG	phrog_199	holin	lysis
UHGV-0173783_33	UniRef90	UniRef90_A0A3C0NPD5	Holin	NA
UHGV-0173783_33	eggNOG-mapper	742738.HMPREF9460_01388	Bacteriophage holin family	NA
UHGV-0173783_33	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0173783_33	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0173783_33	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0173783_33	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0173783_34	PHROG	phrog_14030	NA	unknown function
UHGV-0173783_34	UniRef90	UniRef90_A0A316NTC6	PG_binding_1 domain-containing protein	NA
UHGV-0173783_34	eggNOG-mapper	1321782.HMPREF1986_02283	NlpC/P60 family	NA
UHGV-0173783_34	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0173783_34	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0173783_34	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0173783_34	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-0173783_38	Structural annotation	PF07210, PF01404, TIGR03000, NF038128, COG2512	NA	NA
UHGV-0173783_39	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0173783_39	Structural annotation	PF10651	NA	NA
UHGV-0173783_42	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0173783_42	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0173783_42	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0173783_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173783_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0173783_42	COG	COG4926	Phage-related protein	NA
UHGV-0173783_42	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0173783_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0173783_43	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0173783_43	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0173783_43	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0173783_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0173783_43	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0173783_44	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0173783_44	UniRef90	UniRef90_A0A7X8M4B4	Phage tail protein (Fragment)	NA
UHGV-0173783_44	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0173783_44	COG	COG5283	Phage-related tail protein	NA
UHGV-0173783_44	Structural annotation	COG5280	NA	NA
UHGV-0173783_47	PHROG	phrog_88	major tail protein	tail
UHGV-0173783_47	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0173783_47	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0173783_47	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0173783_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0173783_48	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0173783_48	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0173783_48	Structural annotation	TIGR01725	NA	NA
UHGV-0173783_49	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0173783_49	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0173783_50	PHROG	phrog_19734	NA	unknown function
UHGV-0173783_50	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-0173783_50	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0173783_50	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0173783_51	PHROG	phrog_2550	NA	unknown function
UHGV-0173783_51	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0173783_51	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0173783_51	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0173783_52	PHROG	phrog_10	major head protein	head and packaging
UHGV-0173783_52	UniRef90	UniRef90_UPI000679B959	phage major capsid protein	NA
UHGV-0173783_52	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0173783_52	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0173783_52	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0173783_52	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0173783_52	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0173783_53	KOfam	K06904	NA	NA
UHGV-0173783_53	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0173783_53	UniRef90	UniRef90_U2SBX0	Phage prohead protease, HK97 family	NA
UHGV-0173783_53	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0173783_53	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0173783_53	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0173783_53	COG	COG3740	Phage head maturation protease	NA
UHGV-0173783_53	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0173783_54	PHROG	phrog_12	portal protein	head and packaging
UHGV-0173783_54	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0173783_54	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0173783_54	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0173783_54	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0173783_54	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0173783_54	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0173783_55	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0173783_55	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0173783_55	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0173783_55	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0173783_55	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0173783_55	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0173783_55	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0173783_56	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0173783_56	UniRef90	UniRef90_UPI0004135207	P27 family phage terminase small subunit	NA
UHGV-0173783_56	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0173783_56	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0173783_56	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA