UHGV-0173784

Genome information

Genome length 33,328 bps

CDS count 50

Completeness 97.80% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173784
vOTU ID	vOTU-060396
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584672
BioSample	SAMN09781790
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.80% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.41
Jumbo phage	No

Genome content
Genome length	33,328 bps
GC content	45.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.87%
Average CDS length	615.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173784_2	Structural annotation	PF16857, MF_00273, NF001981	NA	NA
UHGV-0173784_4	UniRef90	UniRef90_R6TEQ2	Conserved domain protein	NA
UHGV-0173784_4	eggNOG-mapper	246199.CUS_5910	NA	NA
UHGV-0173784_4	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0173784_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0173784_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0173784_5	UniRef90	UniRef90_R6T2B0	Peptidase S24-like protein	NA
UHGV-0173784_5	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-0173784_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0173784_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0173784_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0173784_5	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0173784_6	PHROG	phrog_10292	NA	unknown function
UHGV-0173784_6	UniRef90	UniRef90_R6T9F1	TM2 domain-containing protein	NA
UHGV-0173784_6	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-0173784_6	Pfam	PF05154	TM2 domain	TM2
UHGV-0173784_6	COG	COG2314	NA	NA
UHGV-0173784_7	PHROG	phrog_9418	NA	unknown function
UHGV-0173784_7	UniRef90	UniRef90_A0A0K9GC48	Membrane protein	NA
UHGV-0173784_7	eggNOG-mapper	411473.RUMCAL_03118	NA	NA
UHGV-0173784_8	KOfam	K14059	int; integrase	NA
UHGV-0173784_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0173784_8	UniRef90	UniRef90_A0A373VP80	Tyr recombinase domain-containing protein	NA
UHGV-0173784_8	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0173784_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173784_8	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0173784_8	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0173784_9	KOfam	K07273	acm; lysozyme	NA
UHGV-0173784_9	PHROG	phrog_291	endolysin	lysis
UHGV-0173784_9	UniRef90	UniRef90_A0A374BVD1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0173784_9	eggNOG-mapper	1160721.RBI_II00521	hydrolase, family 25	NA
UHGV-0173784_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0173784_9	Pfam	PF01476	LysM domain	LysM
UHGV-0173784_9	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0173784_9	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0173784_10	PHROG	phrog_199	holin	lysis
UHGV-0173784_10	UniRef90	UniRef90_A0A5R9MH90	Phage holin family protein	NA
UHGV-0173784_10	eggNOG-mapper	887325.HMPREF0381_0407	toxin secretion phage lysis holin	NA
UHGV-0173784_10	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0173784_10	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0173784_10	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0173784_10	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0173784_14	PHROG	phrog_6616	tail protein	tail
UHGV-0173784_14	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-0173784_14	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0173784_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0173784_16	UniRef90	UniRef90_A0A174Z8D9	Phage-related protein	NA
UHGV-0173784_16	eggNOG-mapper	1122918.KB907248_gene4489	minor tail protein	NA
UHGV-0173784_16	COG	COG1511	NA	NA
UHGV-0173784_17	PHROG	phrog_8355	NA	unknown function
UHGV-0173784_17	UniRef90	UniRef90_A0A1C6EB03	Bacteriophage Gp15 protein	NA
UHGV-0173784_17	eggNOG-mapper	1232449.BAHV02000018_gene1518	Bacteriophage Gp15 protein	NA
UHGV-0173784_18	PHROG	phrog_8300	NA	unknown function
UHGV-0173784_18	eggNOG-mapper	1507.HMPREF0262_00213	NA	NA
UHGV-0173784_19	PHROG	phrog_820	major tail protein	tail
UHGV-0173784_19	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0173784_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0173784_20	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0173784_20	UniRef90	UniRef90_UPI001BEB3BC5	minor capsid protein	NA
UHGV-0173784_20	eggNOG-mapper	1507.HMPREF0262_01183	NA	NA
UHGV-0173784_20	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0173784_20	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0173784_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0173784_21	eggNOG-mapper	1507.HMPREF0262_01182	NA	NA
UHGV-0173784_22	PHROG	phrog_8710	NA	unknown function
UHGV-0173784_22	eggNOG-mapper	1294142.CINTURNW_1032	NA	NA
UHGV-0173784_22	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0173784_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0173784_23	eggNOG-mapper	1507.HMPREF0262_01180	NA	NA
UHGV-0173784_24	PHROG	phrog_422	major head protein	head and packaging
UHGV-0173784_24	UniRef90	UniRef90_A0A1Y4R5U9	Phage capsid protein	NA
UHGV-0173784_24	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0173784_24	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0173784_26	UniRef90	UniRef90_R6QRM6	Minor capsid protein	NA
UHGV-0173784_26	eggNOG-mapper	1121335.Clst_0388	NA	NA
UHGV-0173784_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0173784_27	UniRef90	UniRef90_UPI000A270255	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0173784_27	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-0173784_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0173784_27	COG	COG2369	NA	NA
UHGV-0173784_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0173784_28	UniRef90	UniRef90_A0A374HLV7	Phage portal protein	NA
UHGV-0173784_28	eggNOG-mapper	717606.PaecuDRAFT_3119	NA	NA
UHGV-0173784_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0173784_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0173784_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173784_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0173784_29	UniRef90	UniRef90_A0A373XSH6	Terminase	NA
UHGV-0173784_29	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0173784_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173784_29	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0173784_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0173784_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0173784_30	UniRef90	UniRef90_A0A374HNN6	Terminase small subunit	NA
UHGV-0173784_30	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0173784_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0173784_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0173784_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0173784_31	PHROG	phrog_10872	NA	unknown function
UHGV-0173784_31	eggNOG-mapper	1280698.AUJS01000061_gene1110	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0173784_31	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0173784_31	Structural annotation	PF10137, MF_03036, TIGR03646, COG4271	NA	NA
UHGV-0173784_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0173784_32	UniRef90	UniRef90_A0A374HLM1	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0173784_32	Structural annotation	PF07374	NA	NA
UHGV-0173784_33	UniRef90	UniRef90_A0A373XZK2	NA	NA
UHGV-0173784_33	eggNOG-mapper	1160721.RBI_I01194	NA	NA
UHGV-0173784_33	Pfam	PF14199	NA	DUF4317
UHGV-0173784_33	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0173784_37	PHROG	phrog_824	NA	unknown function
UHGV-0173784_37	UniRef90	UniRef90_A0A373V639	VRR-NUC domain-containing protein	NA
UHGV-0173784_37	eggNOG-mapper	641107.CDLVIII_1315	VRR-NUC domain	NA
UHGV-0173784_37	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0173784_37	Structural annotation	PF08774	NA	NA
UHGV-0173784_38	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0173784_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0173784_38	UniRef90	UniRef90_A0A373V5W0	ATP-dependent helicase	NA
UHGV-0173784_38	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0173784_38	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0173784_38	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0173784_38	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0173784_38	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0173784_38	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0173784_40	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0173784_40	UniRef90	UniRef90_A0A1C6FHQ3	Superfamily II helicase and inactivated derivatives	NA
UHGV-0173784_40	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0173784_40	Pfam	PF06048	NA	DUF927
UHGV-0173784_40	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0173784_40	COG	COG5519	NA	NA
UHGV-0173784_40	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0173784_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173784_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173784_41	UniRef90	UniRef90_A0A1C6FIL5	Helix-destabilizing protein	NA
UHGV-0173784_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173784_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173784_41	Structural annotation	PF00436, MF_00984, TIGR04418, COG2965	NA	NA
UHGV-0173784_42	PHROG	phrog_3657	NA	unknown function
UHGV-0173784_42	eggNOG-mapper	1121864.OMO_02139	NA	NA
UHGV-0173784_43	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0173784_43	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0173784_43	UniRef90	UniRef90_A0A1C6FHM2	Exodeoxyribonuclease 8	NA
UHGV-0173784_43	eggNOG-mapper	1454004.AW11_02382	NA	NA
UHGV-0173784_43	Pfam	PF12684	NA	DUF3799
UHGV-0173784_43	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0173784_43	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA