UHGV-0173787

Genome information

Genome length 33,700 bps

CDS count 58

Completeness 96.31% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173787
vOTU ID	vOTU-060397
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584669
BioSample	SAMN09781790
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.31% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.99
Jumbo phage	No

Genome content
Genome length	33,700 bps
GC content	52.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.52%
Average CDS length	542.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173787_4	PHROG	phrog_924	NA	unknown function
UHGV-0173787_4	UniRef90	UniRef90_A0A355JDC2	NA	NA
UHGV-0173787_4	Pfam	PF04448	NA	DUF551
UHGV-0173787_6	PHROG	phrog_24658	NA	unknown function
UHGV-0173787_6	UniRef90	UniRef90_R6HTM1	Gp50	NA
UHGV-0173787_7	KOfam	K01491	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	NA
UHGV-0173787_7	PHROG	phrog_7320	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UHGV-0173787_7	UniRef90	UniRef90_A0A7C6YJZ7	Bifunctional protein FolD	NA
UHGV-0173787_7	eggNOG-mapper	1463864.JOGO01000016_gene4597	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	NA
UHGV-0173787_7	Pfam	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
UHGV-0173787_7	COG	COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	NA
UHGV-0173787_7	Structural annotation	PF02882, MF_01576, NF010769, COG0190	NA	NA
UHGV-0173787_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0173787_8	UniRef90	UniRef90_A0A1C6LD55	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0173787_8	eggNOG-mapper	1121335.Clst_0383	NA	NA
UHGV-0173787_8	Structural annotation	PF02996	NA	NA
UHGV-0173787_9	eggNOG-mapper	665950.HMPREF1025_02545	DNA methylase	NA
UHGV-0173787_9	COG	COG0863	DNA modification methylase	NA
UHGV-0173787_10	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0173787_10	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0173787_10	UniRef90	UniRef90_A0A413FXK5	Methyltransferase	NA
UHGV-0173787_10	eggNOG-mapper	1566990.A0A0A0YX44_9CAUD	helicase activity	NA
UHGV-0173787_10	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0173787_10	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0173787_10	Structural annotation	PF01170	NA	NA
UHGV-0173787_11	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0173787_11	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173787_11	UniRef90	UniRef90_A0A0D8IV26	HNH endonuclease	NA
UHGV-0173787_11	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0173787_11	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0173787_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0173787_11	Structural annotation	TIGR02646	NA	NA
UHGV-0173787_12	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0173787_12	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0173787_12	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0173787_12	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0173787_12	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0173787_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0173787_13	UniRef90	UniRef90_A0A2V2GQ67	Terminase	NA
UHGV-0173787_13	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0173787_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0173787_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0173787_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0173787_13	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0173787_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0173787_14	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0173787_14	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0173787_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0173787_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0173787_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0173787_14	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0173787_15	KOfam	K06904	NA	NA
UHGV-0173787_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0173787_15	UniRef90	UniRef90_U2SBX0	Phage prohead protease, HK97 family	NA
UHGV-0173787_15	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0173787_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0173787_15	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0173787_15	COG	COG3740	Phage head maturation protease	NA
UHGV-0173787_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0173787_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0173787_16	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0173787_16	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0173787_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0173787_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0173787_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0173787_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0173787_17	PHROG	phrog_2550	NA	unknown function
UHGV-0173787_17	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0173787_17	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0173787_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0173787_18	PHROG	phrog_19734	NA	unknown function
UHGV-0173787_18	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-0173787_18	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0173787_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0173787_19	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0173787_19	Structural annotation	PF05657	NA	NA
UHGV-0173787_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0173787_20	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0173787_20	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0173787_20	Structural annotation	TIGR01725	NA	NA
UHGV-0173787_21	PHROG	phrog_88	major tail protein	tail
UHGV-0173787_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0173787_23	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0173787_23	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0173787_23	eggNOG-mapper	720554.Clocl_3669	Phage tail tape measure protein, TP901 family	NA
UHGV-0173787_23	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0173787_23	Structural annotation	PF20155	NA	NA
UHGV-0173787_24	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0173787_24	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0173787_24	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0173787_24	COG	COG4722	Phage-related protein YomH	NA
UHGV-0173787_24	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0173787_25	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0173787_25	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0173787_25	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0173787_25	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173787_25	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0173787_25	COG	COG4926	Phage-related protein	NA
UHGV-0173787_25	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0173787_26	PHROG	phrog_372	tail protein	tail
UHGV-0173787_26	UniRef90	UniRef90_UPI00195FD9F2	NA	NA
UHGV-0173787_26	eggNOG-mapper	658659.HMPREF0983_03294	NA	NA
UHGV-0173787_26	Pfam	PF05895	NA	DUF859
UHGV-0173787_26	COG	COG4675	Phage tail collar domain	NA
UHGV-0173787_26	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0173787_28	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0173787_28	PHROG	phrog_329	minor tail protein	tail
UHGV-0173787_28	UniRef90	UniRef90_A0A316PD96	NlpC/P60 domain-containing protein	NA
UHGV-0173787_28	eggNOG-mapper	1033740.CAEW01000032_gene2157	NlpC/P60 family	NA
UHGV-0173787_28	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0173787_28	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0173787_28	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0173787_28	Structural annotation	PF00877, PF18342, NF033742, NF041850, COG0791, COG4991	NA	NA
UHGV-0173787_29	PHROG	phrog_1863	NA	unknown function
UHGV-0173787_29	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-0173787_30	eggNOG-mapper	394503.Ccel_1297	NA	NA
UHGV-0173787_31	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-0173787_32	PHROG	phrog_18108	NA	unknown function
UHGV-0173787_32	UniRef90	UniRef90_UPI001EF69CCF	helix-turn-helix domain-containing protein	NA
UHGV-0173787_32	AcrCatalog	cluster_115962	NA	NA
UHGV-0173787_32	Structural annotation	PF07443	NA	NA
UHGV-0173787_34	Pfam	PF08681	NA	DUF1778
UHGV-0173787_34	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0173787_35	KOfam	K14059	int; integrase	NA
UHGV-0173787_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0173787_35	UniRef90	UniRef90_UPI00030B7B7C	tyrosine-type recombinase/integrase	NA
UHGV-0173787_35	eggNOG-mapper	1007096.BAGW01000023_gene159	Phage integrase family	NA
UHGV-0173787_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173787_35	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173787_35	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0173787_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173787_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0173787_39	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0173787_39	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0173787_39	UniRef90	UniRef90_UPI001A9C6895	helix-turn-helix transcriptional regulator	NA
UHGV-0173787_39	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0173787_39	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0173787_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173787_39	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0173787_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0173787_40	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0173787_40	UniRef90	UniRef90_UPI001EDCF802	helix-turn-helix domain-containing protein	NA
UHGV-0173787_40	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0173787_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173787_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173787_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0173787_42	Structural annotation	PF09202, MF_01177, TIGR01889, COG5631	NA	NA
UHGV-0173787_45	Structural annotation	PF05339, MF_00535, NF002773, COG1476	NA	NA
UHGV-0173787_49	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0173787_49	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0173787_50	PHROG	phrog_7566	NA	unknown function
UHGV-0173787_50	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0173787_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173787_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173787_51	UniRef90	UniRef90_A0A2N2A191	Single-stranded DNA-binding protein	NA
UHGV-0173787_51	eggNOG-mapper	1042163.BRLA_c031440	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0173787_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173787_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173787_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173787_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173787_51	Structural annotation	PF00436, MF_00984, NF006445, COG0629	NA	NA
UHGV-0173787_52	PHROG	phrog_16304	NA	unknown function
UHGV-0173787_52	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0173787_52	Pfam	PF19808	NA	DUF6291
UHGV-0173787_52	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0173787_54	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0173787_54	UniRef90	UniRef90_A0A1E7GWT5	MazG domain-containing protein (Fragment)	NA
UHGV-0173787_54	eggNOG-mapper	428127.EUBDOL_01514	NA	NA
UHGV-0173787_54	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0173787_56	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0173787_56	UniRef90	UniRef90_UPI000EF4F8BA	Lar family restriction alleviation protein	NA
UHGV-0173787_56	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA