UHGV-0173822

Genome information

Genome length 34,912 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9680

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173822
vOTU ID	vOTU-003618
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588192
BioSample	SAMN09781730
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9680
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.55
Jumbo phage	No

Genome content
Genome length	34,912 bps
GC content	42.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.39%
Average CDS length	602.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173822_1	PHROG	phrog_4433	NA	unknown function
UHGV-0173822_1	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0173822_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0173822_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0173822_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173822_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173822_3	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0173822_3	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173822_3	UniRef90	UniRef90_A0A3D1JVX4	HNH endonuclease	NA
UHGV-0173822_3	eggNOG-mapper	999413.HMPREF1094_04523	HNH endonuclease	NA
UHGV-0173822_3	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0173822_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0173822_4	KOfam	K14059	int; integrase	NA
UHGV-0173822_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0173822_4	UniRef90	UniRef90_A0A2V2EXF4	Tyr recombinase domain-containing protein	NA
UHGV-0173822_4	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-0173822_4	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0173822_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173822_4	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0173822_14	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-0173822_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0173822_18	Structural annotation	PF09393, PF05561, TIGR02126, COG5437	NA	NA
UHGV-0173822_19	UniRef90	UniRef90_A0A2Z4GU91	Minor capsid protein	NA
UHGV-0173822_20	Structural annotation	PF07405, TIGR01563	NA	NA
UHGV-0173822_22	Structural annotation	PF05065, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0173822_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0173822_24	UniRef90	UniRef90_A0A2Z4GUI4	Minor capsid protein 2	NA
UHGV-0173822_24	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-0173822_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0173822_24	COG	COG2369	NA	NA
UHGV-0173822_24	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0173822_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0173822_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0173822_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0173822_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173822_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0173822_27	UniRef90	UniRef90_A0A843GU32	Phage terminase large subunit (Fragment)	NA
UHGV-0173822_27	eggNOG-mapper	1035189.HMPREF9954_0302	Terminase-like family	NA
UHGV-0173822_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0173822_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173822_27	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0173822_28	Structural annotation	PF02796, NF040785	NA	NA
UHGV-0173822_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0173822_31	Structural annotation	PF06530, PF21662, NF007224, COG1595	NA	NA
UHGV-0173822_32	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0173822_32	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0173822_32	UniRef90	UniRef90_A0A7K3ZH92	DNA (Cytosine-5-)-methyltransferase	NA
UHGV-0173822_32	eggNOG-mapper	449673.BACSTE_02181	C-5 cytosine-specific DNA methylase	NA
UHGV-0173822_32	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0173822_32	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0173822_32	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0173822_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0173822_32	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0173822_33	Structural annotation	PF18892	NA	NA
UHGV-0173822_36	PHROG	phrog_2316	NA	unknown function
UHGV-0173822_36	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0173822_36	eggNOG-mapper	1227349.C170_11270	NA	NA
UHGV-0173822_36	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0173822_38	Structural annotation	PF10842, MF_00436, NF011232, COG1923	NA	NA
UHGV-0173822_39	PHROG	phrog_3136	NA	unknown function
UHGV-0173822_39	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0173822_39	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0173822_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173822_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173822_42	UniRef90	UniRef90_A0A356F1Z1	Single-stranded DNA-binding protein	NA
UHGV-0173822_42	eggNOG-mapper	913865.DOT_1298	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0173822_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173822_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173822_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173822_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173822_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0173822_43	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0173822_43	UniRef90	UniRef90_UPI0018CC28AD	DnaD domain protein	NA
UHGV-0173822_43	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0173822_43	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0173822_43	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0173822_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0173822_43	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0173822_45	PHROG	phrog_7566	NA	unknown function
UHGV-0173822_45	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0173822_46	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0173822_46	UniRef90	UniRef90_UPI00067E9A80	recombination protein NinB	NA
UHGV-0173822_46	eggNOG-mapper	428127.EUBDOL_01246	NA	NA
UHGV-0173822_46	Pfam	PF05772	NinB protein	NinB
UHGV-0173822_46	Structural annotation	PF05772	NA	NA
UHGV-0173822_47	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173822_47	UniRef90	UniRef90_A0A6N2RMY2	ERF superfamily protein	NA
UHGV-0173822_47	eggNOG-mapper	226185.EF_2031	ERF superfamily	NA
UHGV-0173822_47	Pfam	PF04404	ERF superfamily	ERF
UHGV-0173822_47	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0173822_48	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0173822_48	UniRef90	UniRef90_UPI00048FFBC6	siphovirus Gp157 family protein	NA
UHGV-0173822_48	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-0173822_48	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0173822_48	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0173822_51	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0173822_51	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0173822_51	UniRef90	UniRef90_A0A3P5VM76	HTH cro/C1-type domain-containing protein	NA
UHGV-0173822_51	eggNOG-mapper	1280671.AUJH01000013_gene2656	Helix-turn-helix domain	NA
UHGV-0173822_51	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0173822_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173822_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173822_51	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0173822_55	PHROG	phrog_27197	NA	unknown function
UHGV-0173822_55	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0173822_55	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0173822_55	Structural annotation	NF007410	NA	NA