UHGV-0173823

Genome information

Genome length 41,366 bps

CDS count 49

Completeness 100.00% (complete)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173823
vOTU ID	vOTU-001101
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588193
BioSample	SAMN09781730
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.15
Jumbo phage	No

Genome content
Genome length	41,366 bps
GC content	35.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	96.07%
Average CDS length	817.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173823_1	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0173823_1	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0173823_1	UniRef90	UniRef90_UPI0018DD683A	RNA-directed DNA polymerase	NA
UHGV-0173823_1	eggNOG-mapper	1031288.AXAA01000043_gene1778	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0173823_1	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0173823_1	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0173823_1	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0173823_1	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0173823_3	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0173823_8	PHROG	phrog_22978	NA	unknown function
UHGV-0173823_8	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0173823_8	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0173823_8	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0173823_9	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0173823_9	PHROG	phrog_95	integrase	integration and excision
UHGV-0173823_9	UniRef90	UniRef90_A0A3D5PFZ1	Recombinase family protein	NA
UHGV-0173823_9	eggNOG-mapper	903814.ELI_1010	Resolvase, N terminal domain	NA
UHGV-0173823_9	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0173823_9	Pfam	PF07508	Recombinase	Recombinase
UHGV-0173823_9	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0173823_9	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0173823_9	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0173823_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0173823_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173823_11	UniRef90	UniRef90_UPI0015701830	helix-turn-helix domain-containing protein	NA
UHGV-0173823_11	eggNOG-mapper	552396.HMPREF0863_00300	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0173823_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173823_11	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0173823_11	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0173823_12	UniRef90	UniRef90_UPI00082E258D	helix-turn-helix domain-containing protein	NA
UHGV-0173823_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173823_12	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0173823_14	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0173823_14	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0173823_16	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173823_16	UniRef90	UniRef90_A0A6M3JN22	Putative PD-(D/E)XK nuclease superfamily protein	NA
UHGV-0173823_16	eggNOG-mapper	1171373.PACID_15720	Belongs to the helicase family. UvrD subfamily	NA
UHGV-0173823_16	COG	COG2887	RecB family exonuclease	NA
UHGV-0173823_16	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0173823_17	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173823_17	UniRef90	UniRef90_UPI00096C2D47	ERF family protein	NA
UHGV-0173823_17	eggNOG-mapper	420246.GTNG_2854	ERF superfamily	NA
UHGV-0173823_17	Pfam	PF04404	ERF superfamily	ERF
UHGV-0173823_17	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0173823_18	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0173823_18	eggNOG-mapper	1118057.CAGX01000020_gene1649	NA	NA
UHGV-0173823_18	Structural annotation	PF05772	NA	NA
UHGV-0173823_19	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173823_19	UniRef90	UniRef90_A0A7K3ZA74	HNH endonuclease	NA
UHGV-0173823_19	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0173823_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173823_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173823_21	UniRef90	UniRef90_A0A356F1Z1	Single-stranded DNA-binding protein	NA
UHGV-0173823_21	eggNOG-mapper	562743.JH976434_gene1965	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0173823_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173823_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173823_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173823_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173823_21	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0173823_22	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0173823_22	UniRef90	UniRef90_A0A6A4UXR4	Phage replication initiation	NA
UHGV-0173823_22	eggNOG-mapper	1507.HMPREF0262_00303	DnaD domain protein	NA
UHGV-0173823_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0173823_22	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0173823_23	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0173823_23	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0173823_23	UniRef90	UniRef90_F7V9D6	Putative DnaC	NA
UHGV-0173823_23	eggNOG-mapper	1399942.U3PBJ1_9CAUD	IstB-like ATP binding protein	NA
UHGV-0173823_23	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0173823_23	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0173823_26	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0173823_26	UniRef90	UniRef90_A0A385YTL7	Replication terminator protein	NA
UHGV-0173823_26	eggNOG-mapper	1078085.HMPREF1210_01166	NA	NA
UHGV-0173823_27	PHROG	phrog_1029	NA	unknown function
UHGV-0173823_27	eggNOG-mapper	1078085.HMPREF1210_01165	NA	NA
UHGV-0173823_27	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0173823_28	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0173823_28	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0173823_28	UniRef90	UniRef90_A0A3D2D5N1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0173823_28	eggNOG-mapper	1327970.R9ZXR7_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0173823_28	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0173823_28	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0173823_28	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-0173823_29	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0173823_29	UniRef90	UniRef90_A0A414ZQZ4	NAD(P)-dependent oxidoreductase	NA
UHGV-0173823_29	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-0173823_29	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0173823_29	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-0173823_31	eggNOG-mapper	1235835.C814_01168	NA	NA
UHGV-0173823_32	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0173823_32	UniRef90	UniRef90_Q4Z926	ORF101	NA
UHGV-0173823_32	eggNOG-mapper	1283338.Q4Z926_BPTWO	NA	NA
UHGV-0173823_34	PHROG	phrog_1454	NA	unknown function
UHGV-0173823_34	UniRef90	UniRef90_A0A0D7WZ49	Phosphomannomutase	NA
UHGV-0173823_34	eggNOG-mapper	1232453.BAIF02000027_gene4203	NA	NA
UHGV-0173823_37	Structural annotation	PF04545, MF_00674, NF008895, COG1595	NA	NA
UHGV-0173823_39	UniRef90	UniRef90_UPI000B34C540	helix-turn-helix domain-containing protein	NA
UHGV-0173823_39	eggNOG-mapper	1449126.JQKL01000046_gene2071	NA	NA
UHGV-0173823_39	Structural annotation	PF06056, COG2963	NA	NA
UHGV-0173823_40	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0173823_40	PHROG	phrog_24361	terminase	head and packaging
UHGV-0173823_40	UniRef90	UniRef90_R6ELB5	Putative terminase large subunit	NA
UHGV-0173823_40	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-0173823_40	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0173823_40	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0173823_42	PHROG	phrog_156	portal protein	head and packaging
UHGV-0173823_42	UniRef90	UniRef90_A0A8D9UHD1	Portal protein	NA
UHGV-0173823_42	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-0173823_42	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0173823_44	PHROG	phrog_267	major head protein	head and packaging
UHGV-0173823_44	UniRef90	UniRef90_A0A7C6CNA9	P22 coat protein-protein 5 domain protein	NA
UHGV-0173823_44	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-0173823_44	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0173823_46	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0173823_46	Structural annotation	PF20387	NA	NA
UHGV-0173823_47	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0173823_47	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0173823_47	Structural annotation	PF11134, MF_01282, TIGR03300, COG2319	NA	NA
UHGV-0173823_48	PHROG	phrog_38418	NA	unknown function
UHGV-0173823_48	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-0173823_48	COG	COG4675	Phage tail collar domain	NA
UHGV-0173823_49	PHROG	phrog_5302	tail protein	tail
UHGV-0173823_49	UniRef90	UniRef90_A0A388TCL1	Phage-related protein	NA
UHGV-0173823_49	eggNOG-mapper	1151292.QEW_0671	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0173823_49	Pfam	PF13620	Carboxypeptidase regulatory-like domain	CarboxypepD_reg
UHGV-0173823_49	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0173823_49	Structural annotation	PF00041	NA	NA