UHGV-0173825

Genome information

Genome length 21,858 bps

CDS count 28

Completeness 97.27% (high-quality)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173825
vOTU ID	vOTU-010904
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588191
BioSample	SAMN09781730
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.27% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	Yes

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.57
Jumbo phage	No

Genome content
Genome length	21,858 bps
GC content	42.92%
Genetic code	Blepharisma nuclear code (15)
CDS count	28
CDS density	90.26%
Average CDS length	707.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173825_3	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0173825_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0173825_3	UniRef90	UniRef90_UPI00195EC829	tyrosine-type recombinase/integrase	NA
UHGV-0173825_3	eggNOG-mapper	1280671.AUJH01000014_gene725	Phage integrase SAM-like domain	NA
UHGV-0173825_3	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0173825_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173825_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0173825_3	Structural annotation	PF00589, PF13495, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-0173825_4	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-0173825_4	UniRef90	UniRef90_UPI000BFC010A	BhlA/UviB family holin-like peptide	NA
UHGV-0173825_4	eggNOG-mapper	485916.Dtox_1854	BhlA holin family	NA
UHGV-0173825_4	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-0173825_6	PHROG	phrog_372	tail protein	tail
UHGV-0173825_7	COG	COG0845	Multidrug efflux pump subunit AcrA (membrane-fusion protein)	NA
UHGV-0173825_7	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0173825_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0173825_9	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0173825_9	UniRef90	UniRef90_A0A7Z8ZUZ5	Phage, tape measure protein	NA
UHGV-0173825_9	eggNOG-mapper	573061.Clocel_3967	tape measure	NA
UHGV-0173825_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0173825_9	Structural annotation	MF_04138	NA	NA
UHGV-0173825_10	PHROG	phrog_2066	NA	unknown function
UHGV-0173825_10	eggNOG-mapper	702450.CUW_0542	NA	NA
UHGV-0173825_11	UniRef90	UniRef90_A0A0Z7ZZR4	NA	NA
UHGV-0173825_11	eggNOG-mapper	1123304.AQYA01000037_gene231	NA	NA
UHGV-0173825_11	Pfam	PF19591	NA	DUF6096
UHGV-0173825_11	Structural annotation	PF19591, TIGR01674	NA	NA
UHGV-0173825_12	PHROG	phrog_158	major tail protein	tail
UHGV-0173825_12	UniRef90	UniRef90_UPI0005906553	tail protein	NA
UHGV-0173825_12	eggNOG-mapper	1499683.CCFF01000017_gene2926	Phage tail tube protein, TTP	NA
UHGV-0173825_12	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0173825_12	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0173825_13	eggNOG-mapper	1329516.JPST01000016_gene402	NA	NA
UHGV-0173825_13	Structural annotation	PF09646, COG3167	NA	NA
UHGV-0173825_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0173825_14	UniRef90	UniRef90_UPI001CCCF1DE	HK97 gp10 family phage protein	NA
UHGV-0173825_14	eggNOG-mapper	1540257.JQMW01000009_gene3375	NA	NA
UHGV-0173825_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0173825_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0173825_14	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0173825_15	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0173825_16	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0173825_16	UniRef90	UniRef90_UPI00040A5A8D	phage head-tail connector protein	NA
UHGV-0173825_16	eggNOG-mapper	1123405.AUMM01000039_gene148	Phage gp6-like head-tail connector protein	NA
UHGV-0173825_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0173825_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0173825_17	PHROG	phrog_544	major head protein	head and packaging
UHGV-0173825_17	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-0173825_17	eggNOG-mapper	642492.Clole_0972	NA	NA
UHGV-0173825_17	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0173825_18	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0173825_18	UniRef90	UniRef90_UPI00085C378A	NA	NA
UHGV-0173825_18	eggNOG-mapper	1504823.CCMM01000008_gene1042	NA	NA
UHGV-0173825_18	Pfam	PF14265	NA	DUF4355
UHGV-0173825_18	Structural annotation	PF14265	NA	NA
UHGV-0173825_19	PHROG	phrog_6332	NA	unknown function
UHGV-0173825_19	UniRef90	UniRef90_A0A1H9FZ10	Cysteine-rich CPCC	NA
UHGV-0173825_19	eggNOG-mapper	1423755.BAML01000009_gene803	Cysteine-rich CPCC	NA
UHGV-0173825_19	Pfam	PF14206	Cysteine-rich CPCC	Cys_rich_CPCC
UHGV-0173825_19	Structural annotation	PF14206	NA	NA
UHGV-0173825_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0173825_20	UniRef90	UniRef90_A0A6N3FUV3	Phage Mu protein F like protein	NA
UHGV-0173825_20	eggNOG-mapper	743719.PaelaDRAFT_2397	Phage Mu protein F like protein	NA
UHGV-0173825_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0173825_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0173825_20	COG	COG2369	NA	NA
UHGV-0173825_20	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0173825_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0173825_21	UniRef90	UniRef90_A0A843HXP9	Phage portal protein	NA
UHGV-0173825_21	eggNOG-mapper	1123250.KB908417_gene647	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0173825_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0173825_21	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0173825_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0173825_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173825_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0173825_24	UniRef90	UniRef90_UPI0018AA0488	PBSX family phage terminase large subunit	NA
UHGV-0173825_24	eggNOG-mapper	702450.CUW_0531	Phage terminase, large subunit, PBSX family	NA
UHGV-0173825_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0173825_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0173825_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0173825_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173825_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0173825_25	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0173825_25	Structural annotation	PF13022	NA	NA
UHGV-0173825_26	eggNOG-mapper	41431.PCC8801_1674	NA	NA
UHGV-0173825_26	Structural annotation	PF11645, MF_01490, NF040854, COG1591	NA	NA
UHGV-0173825_27	PHROG	phrog_14030	NA	unknown function
UHGV-0173825_27	UniRef90	UniRef90_A0A7X9GLW9	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0173825_27	eggNOG-mapper	1235800.C819_00464	NA	NA
UHGV-0173825_27	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1