UHGV-0173862

Genome information

Genome length 41,283 bps

CDS count 64

Completeness 91.67% (high-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173862
vOTU ID	vOTU-067271
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_579228
BioSample	SAMN09781739
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.67% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.99
Jumbo phage	No

Genome content
Genome length	41,283 bps
GC content	41.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.06%
Average CDS length	582.80 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173862_1	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0173862_1	UniRef90	UniRef90_A0A412EL97	NA	NA
UHGV-0173862_1	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0173862_1	Pfam	PF06048	NA	DUF927
UHGV-0173862_1	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0173862_1	COG	COG5519	NA	NA
UHGV-0173862_1	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0173862_2	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0173862_2	PHROG	phrog_11992	NA	unknown function
UHGV-0173862_2	UniRef90	UniRef90_A0A412EM56	DNA primase	NA
UHGV-0173862_2	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0173862_2	PADLOC	drt-UG29	DRT	DRT
UHGV-0173862_2	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0173862_2	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0173862_2	Structural annotation	PF01807	NA	NA
UHGV-0173862_3	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0173862_3	UniRef90	UniRef90_A0A395XB48	ERCC4 domain-containing protein	NA
UHGV-0173862_3	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0173862_3	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0173862_3	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0173862_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173862_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173862_4	UniRef90	UniRef90_A0A412ELG8	Single-stranded DNA-binding protein	NA
UHGV-0173862_4	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0173862_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173862_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173862_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173862_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173862_4	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0173862_5	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173862_5	UniRef90	UniRef90_A0A1V5UPJ3	ERF superfamily protein	NA
UHGV-0173862_5	eggNOG-mapper	762982.HMPREF9442_00551	Erf family	NA
UHGV-0173862_5	Pfam	PF04404	ERF superfamily	ERF
UHGV-0173862_5	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0173862_6	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0173862_8	Structural annotation	NF011879	NA	NA
UHGV-0173862_13	PHROG	phrog_6058	NA	unknown function
UHGV-0173862_13	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0173862_13	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0173862_15	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0173862_15	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0173862_15	UniRef90	UniRef90_A0A3A6GZT3	Phage repressor protein	NA
UHGV-0173862_15	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0173862_15	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0173862_15	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0173862_15	COG	COG3617	Prophage antirepressor	NA
UHGV-0173862_15	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0173862_16	UniRef90	UniRef90_A0A373NQX7	XRE family transcriptional regulator	NA
UHGV-0173862_16	eggNOG-mapper	1163671.JAGI01000002_gene3923	NA	NA
UHGV-0173862_16	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0173862_17	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0173862_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173862_17	UniRef90	UniRef90_UPI000E51662C	helix-turn-helix domain-containing protein	NA
UHGV-0173862_17	eggNOG-mapper	1140001.I571_01121	Peptidase S24-like	NA
UHGV-0173862_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173862_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173862_17	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0173862_18	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0173862_18	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0173862_18	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0173862_18	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0173862_18	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0173862_19	KOfam	K14059	int; integrase	NA
UHGV-0173862_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0173862_19	UniRef90	UniRef90_A0A6L8SXX0	Tyrosine-type recombinase/integrase	NA
UHGV-0173862_19	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0173862_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173862_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173862_19	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0173862_20	PHROG	phrog_9589	endolysin	lysis
UHGV-0173862_20	UniRef90	UniRef90_A0A6N9LGV5	CHAP domain-containing protein	NA
UHGV-0173862_20	eggNOG-mapper	1123075.AUDP01000020_gene1533	pathogenesis	NA
UHGV-0173862_20	Pfam	PF05257	CHAP domain	CHAP
UHGV-0173862_20	COG	COG3942	Surface antigen	NA
UHGV-0173862_20	Structural annotation	PF08230, PF19087	NA	NA
UHGV-0173862_22	PHROG	phrog_6616	tail protein	tail
UHGV-0173862_22	UniRef90	UniRef90_R5QUN9	Peptidase S74 domain-containing protein	NA
UHGV-0173862_22	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0173862_22	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0173862_22	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-0173862_23	PHROG	phrog_1194	NA	unknown function
UHGV-0173862_23	eggNOG-mapper	394503.Ccel_3034	NA	NA
UHGV-0173862_23	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0173862_24	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0173862_24	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0173862_24	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0173862_24	COG	COG1511	NA	NA
UHGV-0173862_24	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0173862_25	PHROG	phrog_706	NA	unknown function
UHGV-0173862_25	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0173862_25	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0173862_25	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0173862_25	Structural annotation	PF06854	NA	NA
UHGV-0173862_26	PHROG	phrog_11299	NA	unknown function
UHGV-0173862_26	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0173862_26	Structural annotation	PF10666	NA	NA
UHGV-0173862_27	PHROG	phrog_3099	NA	unknown function
UHGV-0173862_27	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0173862_27	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0173862_28	PHROG	phrog_3266	tail completion	connector
UHGV-0173862_28	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0173862_28	Structural annotation	PF12691	NA	NA
UHGV-0173862_29	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0173862_29	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0173862_29	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0173862_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0173862_29	Structural annotation	PF11114	NA	NA
UHGV-0173862_30	PHROG	phrog_3366	NA	unknown function
UHGV-0173862_30	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0173862_30	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0173862_31	UniRef90	UniRef90_A0A2U2EL81	Keratin	NA
UHGV-0173862_32	PHROG	phrog_8680	NA	unknown function
UHGV-0173862_32	UniRef90	UniRef90_A0A412EKN2	NA	NA
UHGV-0173862_32	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0173862_32	Pfam	PF14386	NA	DUF4417
UHGV-0173862_32	Structural annotation	PF14386	NA	NA
UHGV-0173862_34	PHROG	phrog_1129	holin	lysis
UHGV-0173862_34	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0173862_34	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0173862_34	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0173862_34	Structural annotation	PF06946	NA	NA
UHGV-0173862_35	PHROG	phrog_774	NA	unknown function
UHGV-0173862_35	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0173862_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0173862_36	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0173862_37	PHROG	phrog_544	major head protein	head and packaging
UHGV-0173862_37	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0173862_37	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0173862_37	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0173862_37	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0173862_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0173862_38	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0173862_38	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0173862_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0173862_39	PHROG	phrog_28802	NA	unknown function
UHGV-0173862_39	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0173862_40	PHROG	phrog_20016	NA	unknown function
UHGV-0173862_40	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0173862_40	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0173862_40	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0173862_41	PHROG	phrog_16490	NA	unknown function
UHGV-0173862_41	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0173862_42	PHROG	phrog_22984	NA	unknown function
UHGV-0173862_43	PHROG	phrog_21718	NA	unknown function
UHGV-0173862_43	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0173862_45	PHROG	phrog_2104	NA	unknown function
UHGV-0173862_45	UniRef90	UniRef90_A0A1C5PJW7	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0173862_45	eggNOG-mapper	1410625.JHWK01000002_gene45	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173862_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173862_45	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0173862_45	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0173862_47	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0173862_47	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0173862_48	PHROG	phrog_3754	NA	unknown function
UHGV-0173862_48	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0173862_49	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0173862_49	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0173862_49	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0173862_49	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0173862_49	COG	COG2369	NA	NA
UHGV-0173862_49	Structural annotation	PF06152	NA	NA
UHGV-0173862_50	PHROG	phrog_533	portal protein	head and packaging
UHGV-0173862_50	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0173862_50	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0173862_50	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0173862_51	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173862_51	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0173862_51	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0173862_51	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0173862_51	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0173862_51	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0173862_51	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0173862_51	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173862_51	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0173862_52	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0173862_52	AcrCatalog	cluster_11670	NA	NA
UHGV-0173862_53	PHROG	phrog_10714	NA	unknown function
UHGV-0173862_54	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0173862_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173862_54	UniRef90	UniRef90_A0A414EGC7	XRE family transcriptional regulator	NA
UHGV-0173862_54	eggNOG-mapper	1408323.JQKK01000003_gene2732	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173862_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173862_54	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0173862_54	Structural annotation	PF01381, NF041575, COG1396	NA	NA
UHGV-0173862_58	Structural annotation	PF06107, COG4481	NA	NA
UHGV-0173862_59	PHROG	phrog_20593	NA	unknown function
UHGV-0173862_59	AcrCatalog	cluster_27421	NA	NA