UHGV-0173897

Genome information

Genome length 18,305 bps

CDS count 25

Completeness 100.00% (complete)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173897
vOTU ID	vOTU-046503
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583589
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.48
Jumbo phage	No

Genome content
Genome length	18,305 bps
GC content	40.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	87.17%
Average CDS length	639.12 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173897_9	Structural annotation	PF17548	NA	NA
UHGV-0173897_10	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173897_10	UniRef90	UniRef90_A0A345BNN7	Single-stranded DNA-binding protein	NA
UHGV-0173897_10	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0173897_10	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0173897_10	Structural annotation	PF17427	NA	NA
UHGV-0173897_12	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0173897_12	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0173897_12	UniRef90	UniRef90_A0A1W7M4V8	DNA-directed DNA polymerase	NA
UHGV-0173897_12	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0173897_12	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0173897_12	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0173897_13	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0173897_13	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0173897_13	UniRef90	UniRef90_A0A6N8H6M3	M23 family metallopeptidase	NA
UHGV-0173897_13	eggNOG-mapper	1487923.DP73_11070	PFAM Peptidase family M23	NA
UHGV-0173897_13	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0173897_13	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0173897_14	PHROG	phrog_16313	virion structural protein	head and packaging
UHGV-0173897_16	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0173897_18	PHROG	phrog_2038	upper collar connector	connector
UHGV-0173897_18	UniRef90	UniRef90_A0A514AAQ6	Upper collar protein	NA
UHGV-0173897_18	eggNOG-mapper	1309583.M4W5Z5_9CAUD	Phage Connector (GP10)	NA
UHGV-0173897_18	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0173897_18	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0173897_19	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0173897_19	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0173897_19	UniRef90	UniRef90_UPI001968716B	M23 family metallopeptidase	NA
UHGV-0173897_19	eggNOG-mapper	1160707.AJIK01000021_gene1822	G5	NA
UHGV-0173897_19	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0173897_19	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0173897_20	PHROG	phrog_2248	tail protein	tail
UHGV-0173897_20	UniRef90	UniRef90_A0A843GL83	Caud_tail_N domain-containing protein	NA
UHGV-0173897_20	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0173897_20	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0173897_20	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0173897_20	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0173897_21	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0173897_21	UniRef90	UniRef90_A0A843HGP3	Ig-like domain-containing protein	NA
UHGV-0173897_21	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0173897_21	Structural annotation	PF21703, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0173897_22	Structural annotation	PF11418	NA	NA
UHGV-0173897_23	PHROG	phrog_199	holin	lysis
UHGV-0173897_23	UniRef90	UniRef90_S4HBL4	Toxin secretion/phage lysis holin	NA
UHGV-0173897_23	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0173897_23	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0173897_23	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0173897_23	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0173897_24	PHROG	phrog_2150	terminase	head and packaging
UHGV-0173897_24	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0173897_24	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0173897_24	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0173897_24	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA