UHGV-0173907

Genome information

Genome length 20,839 bps

CDS count 39

Completeness 52.59% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173907
vOTU ID	vOTU-028719
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584307
BioSample	SAMN09781744
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.18
Jumbo phage	No

Genome content
Genome length	20,839 bps
GC content	34.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	89.35%
Average CDS length	478.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173907_2	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-0173907_4	Pfam	PF18789	Defence against restriction A C-terminal	DarA_C
UHGV-0173907_4	Structural annotation	PF18789	NA	NA
UHGV-0173907_5	PHROG	phrog_25027	NA	unknown function
UHGV-0173907_5	UniRef90	UniRef90_A0A373B1N4	ArdcN domain-containing protein	NA
UHGV-0173907_5	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0173907_11	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0173907_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173907_11	UniRef90	UniRef90_A0A1Q6LL60	HTH cro/C1-type domain-containing protein	NA
UHGV-0173907_11	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173907_11	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0173907_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173907_11	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0173907_12	KOfam	K14059	int; integrase	NA
UHGV-0173907_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0173907_12	UniRef90	UniRef90_A0A412PAQ5	Site-specific integrase	NA
UHGV-0173907_12	eggNOG-mapper	1582149.A0A0A8WIE1_9CAUD	Phage integrase family	NA
UHGV-0173907_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173907_12	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0173907_14	eggNOG-mapper	1504823.CCMM01000008_gene725	NA	NA
UHGV-0173907_14	Structural annotation	PF09274, COG4710	NA	NA
UHGV-0173907_17	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0173907_18	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0173907_19	PHROG	phrog_21718	NA	unknown function
UHGV-0173907_19	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0173907_22	PHROG	phrog_1220	head protein	head and packaging
UHGV-0173907_22	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-0173907_22	Structural annotation	PF20747	NA	NA
UHGV-0173907_23	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0173907_24	PHROG	phrog_4105	NA	unknown function
UHGV-0173907_24	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0173907_24	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0173907_25	PHROG	phrog_881	holin	lysis
UHGV-0173907_25	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0173907_25	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0173907_25	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0173907_25	Structural annotation	PF16938	NA	NA
UHGV-0173907_26	eggNOG-mapper	428127.EUBDOL_01569	NA	NA
UHGV-0173907_26	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0173907_27	PHROG	phrog_538	minor tail protein	tail
UHGV-0173907_27	UniRef90	UniRef90_A0A1I3HJS7	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0173907_27	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0173907_27	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0173907_27	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0173907_28	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0173907_28	UniRef90	UniRef90_A0A1I3HK03	Phage tail protein	NA
UHGV-0173907_28	eggNOG-mapper	1321782.HMPREF1986_02277	PFAM Phage tail protein	NA
UHGV-0173907_28	COG	COG4722	Phage-related protein YomH	NA
UHGV-0173907_28	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0173907_29	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0173907_29	UniRef90	UniRef90_A0A173RKZ6	Phage-related minor tail protein	NA
UHGV-0173907_29	eggNOG-mapper	693746.OBV_25080	Phage-related minor tail protein	NA
UHGV-0173907_29	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0173907_29	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0173907_29	COG	COG5283	Phage-related tail protein	NA
UHGV-0173907_29	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0173907_32	PHROG	phrog_885	major tail protein	tail
UHGV-0173907_32	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0173907_32	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0173907_32	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0173907_33	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0173907_33	Structural annotation	PF11367	NA	NA
UHGV-0173907_34	PHROG	phrog_17977	NA	unknown function
UHGV-0173907_34	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0173907_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0173907_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0173907_36	PHROG	phrog_544	major head protein	head and packaging
UHGV-0173907_36	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0173907_36	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0173907_36	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0173907_37	UniRef90	UniRef90_A0A174AAF6	Clp R domain-containing protein	NA
UHGV-0173907_37	Structural annotation	PF06810	NA	NA
UHGV-0173907_38	PHROG	phrog_169	tail completion or Neck1 protein	connector
UHGV-0173907_38	UniRef90	UniRef90_A0A6H1MR47	Putative tail component	NA
UHGV-0173907_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0173907_38	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0173907_39	PHROG	phrog_3675	NA	unknown function
UHGV-0173907_39	UniRef90	UniRef90_UPI001C027742	YjcQ family protein	NA
UHGV-0173907_39	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-0173907_39	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0173907_39	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA