UHGV-0173998

Genome information

Genome length 35,791 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173998
vOTU ID	vOTU-072577
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_578984
BioSample	SAMN07501039
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.33
Jumbo phage	No

Genome content
Genome length	35,791 bps
GC content	28.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.17%
Average CDS length	602.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173998_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0173998_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0173998_1	UniRef90	UniRef90_A0A6B4KXC2	Recombinase family protein	NA
UHGV-0173998_1	eggNOG-mapper	1567012.A0A0A7S054_9VIRU	recombinase activity	NA
UHGV-0173998_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0173998_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0173998_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0173998_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0173998_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0173998_3	UniRef90	UniRef90_UPI0005EF9B7C	helix-turn-helix transcriptional regulator	NA
UHGV-0173998_3	eggNOG-mapper	1443122.Z958_p0003	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173998_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0173998_3	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0173998_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173998_4	UniRef90	UniRef90_UPI0005EE4CEE	helix-turn-helix domain-containing protein	NA
UHGV-0173998_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173998_4	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0173998_6	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0173998_6	UniRef90	UniRef90_A0A1S8LA50	ORF6C domain protein	NA
UHGV-0173998_6	eggNOG-mapper	632245.CLP_2719	ORF6C domain	NA
UHGV-0173998_6	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0173998_6	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0173998_6	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0173998_6	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0173998_6	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0173998_11	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0173998_11	UniRef90	UniRef90_A0A7U9GKG7	Phage replication initiation protein	NA
UHGV-0173998_11	eggNOG-mapper	1196322.A370_02071	DnaD domain protein	NA
UHGV-0173998_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0173998_11	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0173998_14	KOfam	K09777	remA; extracellular matrix regulatory protein A	NA
UHGV-0173998_14	UniRef90	UniRef90_UPI001F49263D	NA	NA
UHGV-0173998_14	eggNOG-mapper	537007.BLAHAN_04917	NA	NA
UHGV-0173998_14	Pfam	PF04025	Extracellular matrix regulatory protein A-like	RemA-like
UHGV-0173998_14	COG	COG2052	NA	NA
UHGV-0173998_14	Structural annotation	PF04025, MF_01503, NF003315, COG2052	NA	NA
UHGV-0173998_15	PHROG	phrog_9628	NA	unknown function
UHGV-0173998_15	UniRef90	UniRef90_A0A3P6KN20	Transcriptional regulator	NA
UHGV-0173998_15	eggNOG-mapper	431943.CKL_1876	NA	NA
UHGV-0173998_15	Structural annotation	PF06056, COG2771	NA	NA
UHGV-0173998_16	PHROG	phrog_3928	NA	unknown function
UHGV-0173998_16	eggNOG-mapper	457396.CSBG_01041	NA	NA
UHGV-0173998_17	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0173998_17	PHROG	phrog_216	integrase	integration and excision
UHGV-0173998_17	UniRef90	UniRef90_UPI001629238E	tyrosine-type recombinase/integrase	NA
UHGV-0173998_17	eggNOG-mapper	536233.CLO_0878	Phage integrase family	NA
UHGV-0173998_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173998_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173998_17	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0173998_18	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0173998_18	UniRef90	UniRef90_A0A0D1BWY8	Xaa-His dipeptidase	NA
UHGV-0173998_18	eggNOG-mapper	536232.CLM_1653	NA	NA
UHGV-0173998_18	Structural annotation	PF07141	NA	NA
UHGV-0173998_20	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173998_20	UniRef90	UniRef90_UPI001A9BD19C	HNH endonuclease	NA
UHGV-0173998_20	eggNOG-mapper	1195236.CTER_5117	HNH endonuclease	NA
UHGV-0173998_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0173998_20	Structural annotation	PF05766	NA	NA
UHGV-0173998_21	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0173998_21	UniRef90	UniRef90_A0A1C6DLV1	Phage terminase, small subunit	NA
UHGV-0173998_21	eggNOG-mapper	1291050.JAGE01000001_gene2918	phage terminase small subunit	NA
UHGV-0173998_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0173998_21	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0173998_21	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0173998_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0173998_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0173998_22	UniRef90	UniRef90_A0A1C6DLM3	Phage terminase-like protein, large subunit	NA
UHGV-0173998_22	eggNOG-mapper	1262449.CP6013_1038	Terminase	NA
UHGV-0173998_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0173998_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0173998_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0173998_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0173998_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0173998_23	UniRef90	UniRef90_UPI001785CE81	phage portal protein	NA
UHGV-0173998_23	eggNOG-mapper	632245.CLP_2617	Phage portal protein, HK97 family	NA
UHGV-0173998_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0173998_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0173998_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0173998_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0173998_24	KOfam	K06904	NA	NA
UHGV-0173998_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0173998_24	UniRef90	UniRef90_A0A8I0A6Z0	HK97 family phage prohead protease	NA
UHGV-0173998_24	eggNOG-mapper	1187894.I2E8Y9_9CAUD	peptidase activity	NA
UHGV-0173998_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0173998_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0173998_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0173998_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0173998_25	UniRef90	UniRef90_UPI0017813E56	phage major capsid protein	NA
UHGV-0173998_25	eggNOG-mapper	632245.CLP_2615	Phage major capsid protein, HK97 family	NA
UHGV-0173998_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0173998_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0173998_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0173998_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0173998_26	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0173998_26	UniRef90	UniRef90_UPI00115B5F02	head-tail connector protein	NA
UHGV-0173998_26	eggNOG-mapper	1195236.CTER_5110	Phage gp6-like head-tail connector protein	NA
UHGV-0173998_26	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0173998_26	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0173998_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0173998_27	PHROG	phrog_25	head closure Hc1	connector
UHGV-0173998_27	UniRef90	UniRef90_UPI00189C2B5F	phage head closure protein	NA
UHGV-0173998_27	eggNOG-mapper	411459.RUMOBE_01731	Phage head-tail adaptor	NA
UHGV-0173998_27	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0173998_27	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0173998_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0173998_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0173998_28	UniRef90	UniRef90_UPI00189AB161	HK97 gp10 family phage protein	NA
UHGV-0173998_28	eggNOG-mapper	195103.CPF_1581	Phage protein, HK97 gp10 family	NA
UHGV-0173998_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0173998_28	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0173998_28	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0173998_29	PHROG	phrog_78	tail terminator	connector
UHGV-0173998_29	UniRef90	UniRef90_T0D5T1	Putative gp10 protein	NA
UHGV-0173998_29	eggNOG-mapper	195103.CPF_1580	NA	NA
UHGV-0173998_29	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0173998_30	PHROG	phrog_88	major tail protein	tail
UHGV-0173998_30	UniRef90	UniRef90_UPI001159BB09	major tail protein	NA
UHGV-0173998_30	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0173998_30	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0173998_30	COG	COG5492	NA	NA
UHGV-0173998_30	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0173998_31	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0173998_31	Structural annotation	PF06896	NA	NA
UHGV-0173998_32	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0173998_32	UniRef90	UniRef90_A0A1C6DMK7	Phage-related minor tail protein	NA
UHGV-0173998_32	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0173998_32	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0173998_32	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0173998_32	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0173998_33	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0173998_33	UniRef90	UniRef90_UPI00189728CA	phage tail family protein	NA
UHGV-0173998_33	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0173998_33	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0173998_33	COG	COG4722	Phage-related protein YomH	NA
UHGV-0173998_33	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0173998_34	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0173998_34	UniRef90	UniRef90_UPI0011578197	phage tail protein	NA
UHGV-0173998_34	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0173998_34	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173998_34	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0173998_34	COG	COG4926	Phage-related protein	NA
UHGV-0173998_36	PHROG	phrog_8908	NA	unknown function
UHGV-0173998_36	eggNOG-mapper	1234664.AMRO01000024_gene1821	NA	NA
UHGV-0173998_37	PHROG	phrog_28838	NA	unknown function
UHGV-0173998_37	UniRef90	UniRef90_A0A0P9FIW5	Beta_helix domain-containing protein	NA
UHGV-0173998_37	eggNOG-mapper	536233.CLO_1435	nuclear chromosome segregation	NA
UHGV-0173998_37	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0173998_37	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0173998_37	NCBIFam	TIGR03804.1	parallel beta-helix repeat protein	NA
UHGV-0173998_37	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0173998_38	KOfam	K00640	cysE; serine O-acetyltransferase [EC:2.3.1.30]	NA
UHGV-0173998_38	PHROG	phrog_2154	NA	unknown function
UHGV-0173998_38	UniRef90	UniRef90_UPI00103BF9E4	serine acetyltransferase	NA
UHGV-0173998_38	eggNOG-mapper	1449346.JQMO01000003_gene5328	serine acetyltransferase	NA
UHGV-0173998_38	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep
UHGV-0173998_38	COG	COG1045	Serine acetyltransferase	NA
UHGV-0173998_39	PHROG	phrog_199	holin	lysis
UHGV-0173998_39	UniRef90	UniRef90_UPI0018A11495	phage holin family protein	NA
UHGV-0173998_39	eggNOG-mapper	632245.CLP_1667	Bacteriophage holin family	NA
UHGV-0173998_39	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0173998_39	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0173998_39	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0173998_39	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0173998_40	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0173998_40	PHROG	phrog_3088	amidase	lysis
UHGV-0173998_40	UniRef90	UniRef90_UPI00164CBC62	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173998_40	eggNOG-mapper	457396.CSBG_00241	Ami_2	NA
UHGV-0173998_40	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0173998_40	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0173998_40	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173998_40	Structural annotation	PF01510, PF08460, MF_04111, NF008758, COG5632	NA	NA
UHGV-0173998_45	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0173998_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0173998_45	UniRef90	UniRef90_UPI001AEA7DF6	tyrosine-type recombinase/integrase	NA
UHGV-0173998_45	eggNOG-mapper	1211817.CCAT010000049_gene2471	Belongs to the 'phage' integrase family	NA
UHGV-0173998_45	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0173998_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173998_45	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0173998_45	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0173998_48	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0173998_48	UniRef90	UniRef90_UPI00162487D9	helix-turn-helix domain-containing protein	NA
UHGV-0173998_48	eggNOG-mapper	536233.CLO_1875	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173998_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173998_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0173998_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0173998_49	PHROG	phrog_18533	NA	unknown function
UHGV-0173998_49	UniRef90	UniRef90_A0A6B4JP35	Circadian clock-controlled protein	NA
UHGV-0173998_49	eggNOG-mapper	536233.CLO_1877	NA	NA
UHGV-0173998_50	UniRef90	UniRef90_A5I485	Putative membrane protein	NA
UHGV-0173998_50	eggNOG-mapper	536232.CLM_2490	NA	NA
UHGV-0173998_50	Structural annotation	PF16943	NA	NA
UHGV-0173998_51	eggNOG-mapper	545697.HMPREF0216_02884	NA	NA
UHGV-0173998_51	AcrCatalog	cluster_137178	NA	NA
UHGV-0173998_52	PHROG	phrog_5156	NA	unknown function
UHGV-0173998_52	UniRef90	UniRef90_A0A1C6H0N7	Type IV conjugative transfer system coupling protein TraD	NA
UHGV-0173998_52	eggNOG-mapper	1211817.CCAT010000049_gene2453	COG0433 Predicted ATPase	NA
UHGV-0173998_52	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0173998_52	Structural annotation	PF02534, NF041017, COG3451	NA	NA
UHGV-0173998_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0173998_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173998_53	UniRef90	UniRef90_UPI001EECE70E	helix-turn-helix domain-containing protein	NA
UHGV-0173998_53	eggNOG-mapper	1567013.A0A0A7S0F1_9CAUD	sequence-specific DNA binding	NA
UHGV-0173998_53	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0173998_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173998_53	Structural annotation	PF01381, NF041951, COG1476	NA	NA