UHGV-0173999

Genome information

Genome length 32,657 bps

CDS count 41

Completeness 88.74% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173999
vOTU ID	vOTU-028725
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_578983
BioSample	SAMN07501039
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.7
Jumbo phage	No

Genome content
Genome length	32,657 bps
GC content	36.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	84.75%
Average CDS length	680.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173999_1	Structural annotation	PF06531	NA	NA
UHGV-0173999_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0173999_2	PHROG	phrog_435	endolysin	lysis
UHGV-0173999_2	UniRef90	UniRef90_A0A096CMM2	Cell wall hydrolase (Fragment)	NA
UHGV-0173999_2	eggNOG-mapper	1401067.HMPREF0872_07855	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173999_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0173999_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173999_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0173999_3	PHROG	phrog_27828	NA	unknown function
UHGV-0173999_3	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0173999_3	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0173999_5	PHROG	phrog_22483	NA	unknown function
UHGV-0173999_5	UniRef90	UniRef90_UPI0011DD5599	lysyl-tRNA synthetase	NA
UHGV-0173999_6	KOfam	K13884	MARCO; macrophage receptor with collagenous structure	NA
UHGV-0173999_6	PHROG	phrog_32779	NA	unknown function
UHGV-0173999_6	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0173999_7	eggNOG-mapper	546273.VEIDISOL_01075	NA	NA
UHGV-0173999_7	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0173999_8	eggNOG-mapper	1120931.KB893937_gene2164	NA	NA
UHGV-0173999_9	PHROG	phrog_521	tail protein	tail
UHGV-0173999_9	UniRef90	UniRef90_A0A2S7YX47	NA	NA
UHGV-0173999_9	eggNOG-mapper	546273.VEIDISOL_01073	NA	NA
UHGV-0173999_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0173999_9	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0173999_10	PHROG	phrog_6	baseplate protein	tail
UHGV-0173999_10	UniRef90	UniRef90_C4FQK4	Baseplate J-like protein	NA
UHGV-0173999_10	eggNOG-mapper	546273.VEIDISOL_01072	Baseplate J-like protein	NA
UHGV-0173999_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0173999_10	COG	COG3299	NA	NA
UHGV-0173999_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0173999_11	PHROG	phrog_120	baseplate protein	tail
UHGV-0173999_11	UniRef90	UniRef90_A0A3A6WE45	NA	NA
UHGV-0173999_11	eggNOG-mapper	546273.VEIDISOL_01071	NA	NA
UHGV-0173999_11	Pfam	PF10934	NA	DUF2634
UHGV-0173999_11	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0173999_11	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0173999_12	PHROG	phrog_579	NA	unknown function
UHGV-0173999_12	UniRef90	UniRef90_A0A3A6W0I0	NA	NA
UHGV-0173999_12	eggNOG-mapper	546273.VEIDISOL_01070	NA	NA
UHGV-0173999_12	Pfam	PF10844	NA	DUF2577
UHGV-0173999_12	Structural annotation	PF10844	NA	NA
UHGV-0173999_13	PHROG	phrog_400	tail protein	tail
UHGV-0173999_13	UniRef90	UniRef90_UPI000CF8ACDE	phage tail tip lysozyme	NA
UHGV-0173999_13	eggNOG-mapper	546273.VEIDISOL_01069	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0173999_13	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0173999_13	Structural annotation	PF14594, PF05382, NF033848, COG4379	NA	NA
UHGV-0173999_14	PHROG	phrog_380	endolysin	lysis
UHGV-0173999_14	UniRef90	UniRef90_A0A496P7P0	Peptidoglycan-binding protein	NA
UHGV-0173999_14	eggNOG-mapper	546273.VEIDISOL_01068	PFAM LysM domain	NA
UHGV-0173999_14	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0173999_14	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0173999_15	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0173999_15	UniRef90	UniRef90_A0A3A6W8X2	TMP_3 domain-containing protein	NA
UHGV-0173999_15	eggNOG-mapper	546273.VEIDISOL_01067	tape measure	NA
UHGV-0173999_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0173999_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0173999_15	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0173999_15	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0173999_16	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0173999_16	UniRef90	UniRef90_A0A2S7YX39	Phage portal protein	NA
UHGV-0173999_16	eggNOG-mapper	1321779.HMPREF1984_01297	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0173999_16	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0173999_16	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0173999_17	PHROG	phrog_365	tail protein	tail
UHGV-0173999_17	UniRef90	UniRef90_R7FA15	NA	NA
UHGV-0173999_17	eggNOG-mapper	1195236.CTER_3996	Phage tail tube protein	NA
UHGV-0173999_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0173999_17	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0173999_18	PHROG	phrog_279	tail sheath	tail
UHGV-0173999_18	UniRef90	UniRef90_U7UPL4	Phage tail sheath protein	NA
UHGV-0173999_18	eggNOG-mapper	546273.VEIDISOL_01064	Phage tail sheath C-terminal domain	NA
UHGV-0173999_18	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0173999_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0173999_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0173999_18	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0173999_19	PHROG	phrog_966	NA	unknown function
UHGV-0173999_20	PHROG	phrog_525	NA	unknown function
UHGV-0173999_20	UniRef90	UniRef90_A0A0D3VCS5	NA	NA
UHGV-0173999_20	eggNOG-mapper	546273.VEIDISOL_01062	NA	NA
UHGV-0173999_20	Pfam	PF20765	NA	DUF6838
UHGV-0173999_20	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0173999_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0173999_21	UniRef90	UniRef90_A0A3A6WE51	HK97 gp10 family phage protein	NA
UHGV-0173999_21	eggNOG-mapper	546273.VEIDISOL_01061	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0173999_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0173999_21	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0173999_22	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0173999_22	UniRef90	UniRef90_UPI00110CBC63	ABC transporter ATP-binding protein	NA
UHGV-0173999_22	eggNOG-mapper	546273.VEIDISOL_01060	NA	NA
UHGV-0173999_22	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0173999_23	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0173999_23	eggNOG-mapper	546273.VEIDISOL_01059	NA	NA
UHGV-0173999_23	Structural annotation	PF05135	NA	NA
UHGV-0173999_24	PHROG	phrog_544	major head protein	head and packaging
UHGV-0173999_24	UniRef90	UniRef90_A0A2S7YX03	N4-gp56 family major capsid protein	NA
UHGV-0173999_24	eggNOG-mapper	546273.VEIDISOL_00714	NA	NA
UHGV-0173999_24	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0173999_24	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0173999_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0173999_25	UniRef90	UniRef90_C4FQI9	Phage minor structural protein GP20	NA
UHGV-0173999_25	eggNOG-mapper	1111454.HMPREF1250_0176	Phage minor structural protein GP20	NA
UHGV-0173999_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0173999_25	Structural annotation	PF06810	NA	NA
UHGV-0173999_26	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0173999_26	UniRef90	UniRef90_A0A2S7YX25	Phage_Mu_F domain-containing protein	NA
UHGV-0173999_26	eggNOG-mapper	546273.VEIDISOL_01056	Phage Mu protein F like protein	NA
UHGV-0173999_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0173999_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0173999_26	COG	COG2369	NA	NA
UHGV-0173999_26	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0173999_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0173999_27	UniRef90	UniRef90_A0A2S7YX49	Phage portal protein	NA
UHGV-0173999_27	eggNOG-mapper	546273.VEIDISOL_01055	Portal protein	NA
UHGV-0173999_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0173999_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0173999_28	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0173999_28	UniRef90	UniRef90_A0A3A6WL61	Terminase	NA
UHGV-0173999_28	eggNOG-mapper	546273.VEIDISOL_01054	TIGRFAM Phage	NA
UHGV-0173999_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0173999_28	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0173999_28	COG	COG5410	NA	NA
UHGV-0173999_28	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0173999_33	Structural annotation	PF07374	NA	NA
UHGV-0173999_35	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0173999_35	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0173999_35	UniRef90	UniRef90_A0A3A6W746	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0173999_35	eggNOG-mapper	546273.VEIDISOL_01050	sigma factor activity	NA
UHGV-0173999_35	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0173999_35	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0173999_35	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0173999_38	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173999_38	UniRef90	UniRef90_Q4Z920	ORF076	NA
UHGV-0173999_38	eggNOG-mapper	546273.VEIDISOL_01044	NA	NA
UHGV-0173999_38	Structural annotation	PF17375	NA	NA
UHGV-0173999_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173999_41	KOfam	K14059	int; integrase	NA
UHGV-0173999_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0173999_41	UniRef90	UniRef90_C4FQH3	Site-specific recombinase, phage integrase family	NA
UHGV-0173999_41	eggNOG-mapper	546273.VEIDISOL_01041	Phage integrase family	NA
UHGV-0173999_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173999_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173999_41	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA