UHGV-0174019

Genome information

Genome length 38,050 bps

CDS count 53

Completeness 100.00% (complete)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174019
vOTU ID	vOTU-046505
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584953
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.61
Jumbo phage	No

Genome content
Genome length	38,050 bps
GC content	55.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.35%
Average CDS length	668.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174019_1	PHROG	phrog_22978	NA	unknown function
UHGV-0174019_1	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0174019_2	PHROG	phrog_13908	NA	unknown function
UHGV-0174019_2	eggNOG-mapper	748224.HMPREF9436_01398	Cysteine protease Prp	NA
UHGV-0174019_2	COG	COG2868	NA	NA
UHGV-0174019_3	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0174019_3	UniRef90	UniRef90_A0A3C0NPN1	N4-gp56 family major capsid protein	NA
UHGV-0174019_3	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0174019_3	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0174019_3	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0174019_5	PHROG	phrog_12105	NA	unknown function
UHGV-0174019_5	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0174019_6	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0174019_6	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0174019_6	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0174019_8	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0174019_8	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0174019_8	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0174019_8	Structural annotation	PF07353, COG3979	NA	NA
UHGV-0174019_9	Structural annotation	PF07210, TIGR03000	NA	NA
UHGV-0174019_12	PHROG	phrog_27545	NA	unknown function
UHGV-0174019_12	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-0174019_12	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-0174019_14	PHROG	phrog_14030	NA	unknown function
UHGV-0174019_14	UniRef90	UniRef90_A0A316NTC6	PG_binding_1 domain-containing protein	NA
UHGV-0174019_14	eggNOG-mapper	1321782.HMPREF1986_02283	NlpC/P60 family	NA
UHGV-0174019_14	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0174019_14	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0174019_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0174019_14	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-0174019_15	PHROG	phrog_199	holin	lysis
UHGV-0174019_15	UniRef90	UniRef90_A0A3C0NPD5	Holin	NA
UHGV-0174019_15	eggNOG-mapper	742738.HMPREF9460_00365	Bacteriophage holin family	NA
UHGV-0174019_15	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0174019_15	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0174019_15	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0174019_15	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0174019_16	Structural annotation	PF16509, MF_00674, NF008895, COG2739	NA	NA
UHGV-0174019_19	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0174019_19	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0174019_20	KOfam	K14059	int; integrase	NA
UHGV-0174019_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0174019_20	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0174019_20	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0174019_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174019_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174019_20	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0174019_22	UniRef90	UniRef90_A0A810Q5N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0174019_22	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0174019_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174019_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174019_22	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174019_23	eggNOG-mapper	1280679.ATVX01000003_gene3145	neuron death in response to oxidative stress	NA
UHGV-0174019_23	COG	COG1864	DNA/RNA endonuclease G, NUC1	NA
UHGV-0174019_24	UniRef90	UniRef90_A0A2N2CNE6	NA	NA
UHGV-0174019_24	eggNOG-mapper	742738.HMPREF9460_02806	NA	NA
UHGV-0174019_34	PHROG	phrog_824	NA	unknown function
UHGV-0174019_34	UniRef90	UniRef90_A0A6N8GXS9	VRR-NUC domain-containing protein	NA
UHGV-0174019_34	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0174019_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0174019_35	PHROG	phrog_24518	NA	unknown function
UHGV-0174019_35	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-0174019_36	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0174019_36	UniRef90	UniRef90_A0A4U8T4F4	Sugar-phosphate nucleotidyltransferase	NA
UHGV-0174019_36	eggNOG-mapper	537971.HCCG_00428	NA	NA
UHGV-0174019_36	Structural annotation	PF05869, MF_00607, NF000468, COG0030	NA	NA
UHGV-0174019_38	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0174019_38	UniRef90	UniRef90_A0A810Q0N4	Methyltransferase	NA
UHGV-0174019_38	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0174019_38	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0174019_38	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0174019_38	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0174019_38	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0174019_40	PHROG	phrog_924	NA	unknown function
UHGV-0174019_40	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-0174019_40	Pfam	PF04448	NA	DUF551
UHGV-0174019_45	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174019_45	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-0174019_45	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0174019_48	UniRef90	UniRef90_A0A3C0NNN3	HTH psq-type domain-containing protein	NA
UHGV-0174019_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174019_49	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0174019_49	UniRef90	UniRef90_A0A3C0NMI6	Terminase-like family protein	NA
UHGV-0174019_49	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0174019_49	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0174019_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174019_49	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0174019_50	PHROG	phrog_156	portal protein	head and packaging
UHGV-0174019_50	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0174019_50	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0174019_51	KOfam	K07584	NA	NA
UHGV-0174019_51	PHROG	phrog_4478	peptidase	other
UHGV-0174019_51	UniRef90	UniRef90_A0A2N6APL4	Ribosomal-processing cysteine protease Prp	NA
UHGV-0174019_51	eggNOG-mapper	1114972.AUAW01000001_gene1462	Cysteine protease Prp	NA
UHGV-0174019_51	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0174019_51	COG	COG2868	NA	NA
UHGV-0174019_51	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0174019_52	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA