UHGV-0174057

Genome information

Genome length 36,856 bps

CDS count 58

Completeness 87.90% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174057
vOTU ID	vOTU-028582
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581295
BioSample	SAMN09781689
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.92
Jumbo phage	No

Genome content
Genome length	36,856 bps
GC content	56.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	94.51%
Average CDS length	605.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174057_1	PHROG	phrog_19111	NA	unknown function
UHGV-0174057_1	eggNOG-mapper	1297617.JPJD01000034_gene670	NA	NA
UHGV-0174057_1	Structural annotation	PF01344, PF13854, TIGR03548, COG3055	NA	NA
UHGV-0174057_2	PHROG	phrog_134	NA	unknown function
UHGV-0174057_2	UniRef90	UniRef90_A0A7X9H6W0	XkdX family protein	NA
UHGV-0174057_2	eggNOG-mapper	697281.Mahau_0596	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0174057_2	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0174057_2	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0174057_3	UniRef90	UniRef90_R6HCD7	RNA binding protein Jsn1 putative	NA
UHGV-0174057_4	eggNOG-mapper	742823.HMPREF9465_00923	Membrane	NA
UHGV-0174057_4	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0174057_4	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0174057_5	PHROG	phrog_1396	tail fiber protein	tail
UHGV-0174057_5	UniRef90	UniRef90_UPI0013F616D1	short-chain fatty acid transporter	NA
UHGV-0174057_5	eggNOG-mapper	762966.HMPREF9439_01055	tail collar domain protein	NA
UHGV-0174057_5	COG	COG4675	Phage tail collar domain	NA
UHGV-0174057_5	Structural annotation	PF14600	NA	NA
UHGV-0174057_6	PHROG	phrog_587	structural protein	head and packaging
UHGV-0174057_6	UniRef90	UniRef90_UPI0013F5E2B1	NA	NA
UHGV-0174057_6	eggNOG-mapper	742823.HMPREF9465_00926	NA	NA
UHGV-0174057_6	Pfam	PF11041	NA	DUF2612
UHGV-0174057_6	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0174057_7	PHROG	phrog_6	baseplate protein	tail
UHGV-0174057_7	UniRef90	UniRef90_K1KI67	Baseplate_J domain-containing protein	NA
UHGV-0174057_7	eggNOG-mapper	742823.HMPREF9465_00927	Baseplate J-like protein	NA
UHGV-0174057_7	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0174057_7	COG	COG3299	NA	NA
UHGV-0174057_7	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0174057_8	PHROG	phrog_120	baseplate protein	tail
UHGV-0174057_8	eggNOG-mapper	1203554.HMPREF1476_01519	NA	NA
UHGV-0174057_8	Structural annotation	PF10761, TIGR03357, COG3628	NA	NA
UHGV-0174057_9	PHROG	phrog_3216	baseplate assembly protein	tail
UHGV-0174057_9	UniRef90	UniRef90_K1JIF5	Phage_spike domain-containing protein	NA
UHGV-0174057_9	eggNOG-mapper	742823.HMPREF9465_00928	Baseplate assembly protein	NA
UHGV-0174057_9	Pfam	PF18715	Phage spike trimer	Phage_spike
UHGV-0174057_9	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0174057_9	Structural annotation	PF18352, TIGR01644, COG4384	NA	NA
UHGV-0174057_10	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0174057_10	UniRef90	UniRef90_F3QJE9	Conserved domain protein	NA
UHGV-0174057_10	eggNOG-mapper	469610.HMPREF0189_01203	NA	NA
UHGV-0174057_10	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0174057_11	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0174057_11	eggNOG-mapper	1236501.BAJU01000020_gene2009	NA	NA
UHGV-0174057_12	PHROG	phrog_1830	NA	unknown function
UHGV-0174057_12	UniRef90	UniRef90_F3QJE7	Conserved domain protein	NA
UHGV-0174057_12	eggNOG-mapper	469610.HMPREF0189_01201	NA	NA
UHGV-0174057_12	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0174057_13	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0174057_13	eggNOG-mapper	742823.HMPREF9465_00932	domain protein	NA
UHGV-0174057_13	COG	COG1511	NA	NA
UHGV-0174057_14	PHROG	phrog_1932	tail assembly chaperone	tail
UHGV-0174057_14	eggNOG-mapper	742823.HMPREF9465_00933	NA	NA
UHGV-0174057_14	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0174057_14	Structural annotation	PF21822	NA	NA
UHGV-0174057_15	PHROG	phrog_1964	virion structural protein	head and packaging
UHGV-0174057_15	eggNOG-mapper	762966.HMPREF9439_01045	NA	NA
UHGV-0174057_15	Structural annotation	PF11681, TIGR01603, COG3157	NA	NA
UHGV-0174057_16	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0174057_16	UniRef90	UniRef90_UPI0013F5A4D1	NA	NA
UHGV-0174057_16	eggNOG-mapper	742823.HMPREF9465_00935	NA	NA
UHGV-0174057_16	Pfam	PF11863	NA	DUF3383
UHGV-0174057_16	Structural annotation	PF11863, COG4386	NA	NA
UHGV-0174057_17	PHROG	phrog_1876	NA	unknown function
UHGV-0174057_17	eggNOG-mapper	762966.HMPREF9439_01041	NA	NA
UHGV-0174057_17	Structural annotation	PF16807	NA	NA
UHGV-0174057_18	PHROG	phrog_1912	head protein	head and packaging
UHGV-0174057_18	eggNOG-mapper	762966.HMPREF9439_01040	NA	NA
UHGV-0174057_18	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0174057_19	PHROG	phrog_222	tail protein	tail
UHGV-0174057_19	UniRef90	UniRef90_A0A2G0Q633	Bacteriophage protein	NA
UHGV-0174057_19	eggNOG-mapper	1229485.AMYV01000030_gene1820	NA	NA
UHGV-0174057_20	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0174057_20	UniRef90	UniRef90_A0A0W2CVK9	NA	NA
UHGV-0174057_20	eggNOG-mapper	469610.HMPREF0189_01191	NA	NA
UHGV-0174057_20	Pfam	PF13262	NA	DUF4054
UHGV-0174057_20	Structural annotation	PF13262	NA	NA
UHGV-0174057_22	PHROG	phrog_264	major head protein	head and packaging
UHGV-0174057_22	UniRef90	UniRef90_UPI0010350299	NA	NA
UHGV-0174057_22	eggNOG-mapper	1205683.CAKR01000013_gene1189	Protein conserved in bacteria	NA
UHGV-0174057_22	Pfam	PF09950	NA	DUF2184
UHGV-0174057_22	COG	COG4834	NA	NA
UHGV-0174057_22	Structural annotation	PF09950, MF_04119, NF041155, COG4834	NA	NA
UHGV-0174057_23	PHROG	phrog_2122	minor head protein	head and packaging
UHGV-0174057_23	eggNOG-mapper	1408428.JNJP01000012_gene1116	NA	NA
UHGV-0174057_24	KOfam	K09960	NA	NA
UHGV-0174057_24	PHROG	phrog_2229	head maturation protease	head and packaging
UHGV-0174057_24	UniRef90	UniRef90_UPI001E52763D	NA	NA
UHGV-0174057_24	eggNOG-mapper	1408428.JNJP01000012_gene1115	NA	NA
UHGV-0174057_24	Pfam	PF09979	NA	DUF2213
UHGV-0174057_24	COG	COG3566	NA	NA
UHGV-0174057_24	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0174057_25	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0174057_25	UniRef90	UniRef90_A0A1Y4CYL3	Phage_Mu_F domain-containing protein	NA
UHGV-0174057_25	eggNOG-mapper	1408428.JNJP01000012_gene1114	protein homolog of phage Mu protein gp30	NA
UHGV-0174057_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0174057_25	COG	COG2369	NA	NA
UHGV-0174057_25	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0174057_26	KOfam	K09961	NA	NA
UHGV-0174057_26	PHROG	phrog_146	portal protein	head and packaging
UHGV-0174057_26	UniRef90	UniRef90_UPI001D0BAEDD	NA	NA
UHGV-0174057_26	eggNOG-mapper	1408428.JNJP01000012_gene1113	NA	NA
UHGV-0174057_26	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0174057_26	COG	COG3567	NA	NA
UHGV-0174057_26	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0174057_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174057_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0174057_27	UniRef90	UniRef90_A0A139K4Q1	Phage terminase, large subunit, PBSX family	NA
UHGV-0174057_27	eggNOG-mapper	2754.EH55_06905	DNA packaging	NA
UHGV-0174057_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0174057_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0174057_27	Pfam	PF14890	Intein splicing domain	Intein_splicing
UHGV-0174057_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0174057_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174057_27	Structural annotation	PF04466, PF13403, PF17288, MF_04145, TIGR01547, NF038136, COG1783	NA	NA
UHGV-0174057_28	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0174057_28	UniRef90	UniRef90_UPI001F4FD8EF	DNA-binding protein	NA
UHGV-0174057_28	eggNOG-mapper	742823.HMPREF9465_00949	NA	NA
UHGV-0174057_29	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0174057_30	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0174057_30	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174057_30	UniRef90	UniRef90_A0A3B9Q6M1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0174057_30	eggNOG-mapper	279238.Saro_3008	Endodeoxyribonuclease RusA	NA
UHGV-0174057_30	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0174057_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0174057_30	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0174057_33	Structural annotation	COG3201	NA	NA
UHGV-0174057_37	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0174057_37	PHROG	phrog_5482	NA	unknown function
UHGV-0174057_37	UniRef90	UniRef90_A0A643FF24	AAA family ATPase	NA
UHGV-0174057_37	eggNOG-mapper	398578.Daci_1933	DnaB-like helicase C terminal domain	NA
UHGV-0174057_37	Pfam	PF13481	AAA domain	AAA_25
UHGV-0174057_37	COG	COG0305	Replicative DNA helicase	NA
UHGV-0174057_37	Structural annotation	PF03796, MF_04154, NF004109, COG0305	NA	NA
UHGV-0174057_39	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174057_39	eggNOG-mapper	1203554.HMPREF1476_00237	Helix-turn-helix domain	NA
UHGV-0174057_39	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0174057_39	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0174057_39	Structural annotation	PF10007, MF_01909, NF040939, COG5529	NA	NA
UHGV-0174057_40	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174057_40	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0174057_40	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0174057_44	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174057_44	UniRef90	UniRef90_A0A6J5KNV3	Essential recombination function protein	NA
UHGV-0174057_44	eggNOG-mapper	1209989.TepiRe1_1126	ERF superfamily	NA
UHGV-0174057_44	Pfam	PF04404	ERF superfamily	ERF
UHGV-0174057_44	Structural annotation	PF04404, COG5055	NA	NA
UHGV-0174057_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174057_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174057_45	UniRef90	UniRef90_A0A512LBN4	Single-stranded DNA-binding protein	NA
UHGV-0174057_45	eggNOG-mapper	1163617.SCD_n00654	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0174057_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174057_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174057_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174057_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174057_45	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0174057_46	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0174057_46	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0174057_54	eggNOG-mapper	742821.HMPREF9464_01810	NA	NA
UHGV-0174057_55	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0174057_55	PHROG	phrog_894	endolysin	lysis
UHGV-0174057_55	UniRef90	UniRef90_A0A3B9QA10	Peptidase_M15_3 domain-containing protein	NA
UHGV-0174057_55	eggNOG-mapper	641832.C3VVT1_9CAUD	Peptidase M15	NA
UHGV-0174057_55	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0174057_55	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0174057_56	PHROG	phrog_199	holin	lysis
UHGV-0174057_56	UniRef90	UniRef90_UPI000A02732D	phage holin family protein	NA
UHGV-0174057_56	eggNOG-mapper	742821.HMPREF9464_01076	Bacteriophage holin family	NA
UHGV-0174057_56	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0174057_56	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0174057_56	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0174057_56	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0174057_57	PHROG	phrog_2143	NA	unknown function
UHGV-0174057_57	UniRef90	UniRef90_UPI00158AE458	glucosaminidase domain-containing protein	NA
UHGV-0174057_57	eggNOG-mapper	742823.HMPREF9465_00917	NA	NA
UHGV-0174057_58	KOfam	K10455	KLHL18; kelch-like protein 18	NA
UHGV-0174057_58	PHROG	phrog_19111	NA	unknown function