UHGV-0174058

Genome information

vOTU vOTU-019734

Genome length 34,720 bps

CDS count 53

Completeness 87.56% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174058
vOTU ID	vOTU-019734
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581296
BioSample	SAMN09781689
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.75
Jumbo phage	No

Genome content
Genome length	34,720 bps
GC content	39.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.40%
Average CDS length	602.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174058_1	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0174058_1	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0174058_1	UniRef90	UniRef90_UPI001ADDE49D	ParA family protein	NA
UHGV-0174058_1	eggNOG-mapper	1410653.JHVC01000015_gene715	Anion-transporting ATPase	NA
UHGV-0174058_1	Pfam	PF13614	AAA domain	AAA_31
UHGV-0174058_1	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0174058_1	Structural annotation	PF13614, MF_00355, TIGR03453, COG1192	NA	NA
UHGV-0174058_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174058_2	UniRef90	UniRef90_UPI001F372FD7	sigma-70 region 4 domain-containing protein	NA
UHGV-0174058_2	eggNOG-mapper	411902.CLOBOL_05672	NA	NA
UHGV-0174058_2	Structural annotation	PF02996	NA	NA
UHGV-0174058_3	PHROG	phrog_6568	NA	unknown function
UHGV-0174058_4	UniRef90	UniRef90_A0A1Q6NK87	HTH cro/C1-type domain-containing protein	NA
UHGV-0174058_4	eggNOG-mapper	500632.CLONEX_03572	NA	NA
UHGV-0174058_6	PHROG	phrog_8538	NA	unknown function
UHGV-0174058_6	eggNOG-mapper	1196322.A370_02189	NA	NA
UHGV-0174058_7	UniRef90	UniRef90_K1T9Q6	NA	NA
UHGV-0174058_7	Pfam	PF04448	NA	DUF551
UHGV-0174058_9	PHROG	phrog_7566	NA	unknown function
UHGV-0174058_9	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-0174058_11	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0174058_11	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0174058_11	UniRef90	UniRef90_A0A174KC84	Ribonuclease H	NA
UHGV-0174058_11	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0174058_11	Pfam	PF00075	RNase H	RNase_H
UHGV-0174058_11	COG	COG0328	Ribonuclease HI	NA
UHGV-0174058_11	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0174058_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174058_12	eggNOG-mapper	97139.C824_06117	NA	NA
UHGV-0174058_12	Structural annotation	PF01446	NA	NA
UHGV-0174058_14	Structural annotation	PF10922	NA	NA
UHGV-0174058_15	UniRef90	UniRef90_A0A415G6W5	Winged helix-turn-helix domain-containing protein	NA
UHGV-0174058_15	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0174058_15	Structural annotation	PF20063	NA	NA
UHGV-0174058_18	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-0174058_19	UniRef90	UniRef90_A0A415G6V2	Arc family DNA-binding protein	NA
UHGV-0174058_19	eggNOG-mapper	1007096.BAGW01000034_gene1382	NA	NA
UHGV-0174058_19	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0174058_19	Structural annotation	PF03869, NF008671, COG4877	NA	NA
UHGV-0174058_20	UniRef90	UniRef90_A0A414B869	Ribbon-helix-helix protein, CopG family	NA
UHGV-0174058_20	Pfam	PF05534	HicB family	HicB
UHGV-0174058_21	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174058_21	UniRef90	UniRef90_A0A3A8U981	XRE family transcriptional regulator	NA
UHGV-0174058_21	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174058_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174058_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174058_21	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0174058_22	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0174058_22	UniRef90	UniRef90_U2RAG2	HTH cro/C1-type domain-containing protein	NA
UHGV-0174058_22	eggNOG-mapper	1256908.HMPREF0373_00643	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0174058_22	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0174058_22	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0174058_22	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0174058_23	PHROG	phrog_87	metallo-protease	other
UHGV-0174058_23	UniRef90	UniRef90_UPI001D07A9BA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0174058_23	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-0174058_23	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0174058_23	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0174058_24	eggNOG-mapper	457412.RSAG_01053	NA	NA
UHGV-0174058_25	KOfam	K14059	int; integrase	NA
UHGV-0174058_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0174058_25	UniRef90	UniRef90_A0A415G6Y0	Site-specific integrase	NA
UHGV-0174058_25	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0174058_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174058_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174058_25	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0174058_26	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0174058_26	PHROG	phrog_7	endolysin	lysis
UHGV-0174058_26	UniRef90	UniRef90_A0A1Y4VDT0	Lysozyme	NA
UHGV-0174058_26	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0174058_26	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0174058_26	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0174058_26	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0174058_26	HAMAP	MF_04110	Endolysin	NA
UHGV-0174058_26	Structural annotation	PF08230, PF00959, MF_04110, COG3772	NA	NA
UHGV-0174058_27	PHROG	phrog_37799	NA	unknown function
UHGV-0174058_27	UniRef90	UniRef90_A0A174K913	Phage-related holin (Lysis protein)	NA
UHGV-0174058_27	eggNOG-mapper	610130.Closa_1414	toxin secretion phage lysis holin	NA
UHGV-0174058_27	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0174058_27	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0174058_27	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0174058_27	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0174058_28	Structural annotation	PF00041, NF038367	NA	NA
UHGV-0174058_29	Structural annotation	PF03412, NF033920, COG4990	NA	NA
UHGV-0174058_30	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0174058_31	PHROG	phrog_13589	NA	unknown function
UHGV-0174058_31	eggNOG-mapper	1121335.Clst_0408	ATPase involved in DNA repair	NA
UHGV-0174058_31	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0174058_32	eggNOG-mapper	1410624.JNKK01000017_gene1988	NA	NA
UHGV-0174058_32	Structural annotation	PF01957, NF003085, COG1585	NA	NA
UHGV-0174058_33	eggNOG-mapper	1392487.JIAD01000001_gene511	NA	NA
UHGV-0174058_33	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0174058_34	UniRef90	UniRef90_A0A285PT43	Fibronectin type III	NA
UHGV-0174058_34	eggNOG-mapper	1410624.JNKK01000045_gene550	Fibronectin type 3 domain	NA
UHGV-0174058_34	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0174058_34	Structural annotation	PF02010, PF06995, PF16794, PF16303, PF19271, MF_04116, NF010681, TIGR02126, COG3499, COG3401	NA	NA
UHGV-0174058_35	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0174058_35	UniRef90	UniRef90_A0A1C5Y9X6	Phage-related protein	NA
UHGV-0174058_35	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0174058_35	COG	COG1511	NA	NA
UHGV-0174058_35	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0174058_36	PHROG	phrog_1633	NA	unknown function
UHGV-0174058_36	UniRef90	UniRef90_UPI000352F87D	NA	NA
UHGV-0174058_36	eggNOG-mapper	883110.HMPREF9260_00651	NA	NA
UHGV-0174058_36	Structural annotation	PF17318	NA	NA
UHGV-0174058_38	PHROG	phrog_117	major tail protein	tail
UHGV-0174058_38	UniRef90	UniRef90_A0A1Q8EF54	Major tail protein	NA
UHGV-0174058_38	eggNOG-mapper	585203.SMSK564_1279	domain, Protein	NA
UHGV-0174058_38	COG	COG5492	NA	NA
UHGV-0174058_38	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0174058_39	PHROG	phrog_123	tail terminator	connector
UHGV-0174058_39	UniRef90	UniRef90_A0A4U9XN73	NA	NA
UHGV-0174058_39	eggNOG-mapper	1121864.OMO_02157	NA	NA
UHGV-0174058_39	Structural annotation	PF06141	NA	NA
UHGV-0174058_40	eggNOG-mapper	875454.BAEW01000017_gene1592	NA	NA
UHGV-0174058_41	PHROG	phrog_501	head closure Hc1	connector
UHGV-0174058_41	eggNOG-mapper	665950.HMPREF1025_02528	NA	NA
UHGV-0174058_41	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0174058_42	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0174058_42	UniRef90	UniRef90_UPI0015704514	Gp19/Gp15/Gp42 family protein	NA
UHGV-0174058_42	eggNOG-mapper	742742.HMPREF9452_01301	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0174058_42	Pfam	PF09355	NA	Phage_Gp19
UHGV-0174058_42	Structural annotation	PF09355	NA	NA
UHGV-0174058_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174058_44	UniRef90	UniRef90_R6G6T1	Gp7	NA
UHGV-0174058_44	eggNOG-mapper	205876.Q855V6_9CAUD	peptidase activity	NA
UHGV-0174058_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174058_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174058_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174058_45	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0174058_45	UniRef90	UniRef90_UPI001C03A2F1	NA	NA
UHGV-0174058_45	eggNOG-mapper	1123263.AUKY01000068_gene501	NA	NA
UHGV-0174058_45	Pfam	PF14265	NA	DUF4355
UHGV-0174058_45	Structural annotation	PF14265	NA	NA
UHGV-0174058_46	PHROG	phrog_918	NA	unknown function
UHGV-0174058_46	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0174058_46	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0174058_46	Pfam	PF19791	NA	DUF6275
UHGV-0174058_46	Structural annotation	PF19791	NA	NA
UHGV-0174058_47	PHROG	phrog_872	NA	unknown function
UHGV-0174058_47	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0174058_47	dbAPIS	APIS052	NA	NA
UHGV-0174058_48	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0174058_48	UniRef90	UniRef90_UPI00156D6AA7	Rha family transcriptional regulator	NA
UHGV-0174058_48	eggNOG-mapper	742738.HMPREF9460_02487	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0174058_48	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0174058_48	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0174058_48	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0174058_48	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0174058_50	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0174058_50	UniRef90	UniRef90_A0A844E763	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0174058_50	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0174058_50	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0174058_50	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0174058_50	Structural annotation	PF03496, MF_04139, NF040688	NA	NA
UHGV-0174058_51	PHROG	phrog_104	portal protein	head and packaging
UHGV-0174058_51	UniRef90	UniRef90_A0A174L3Q9	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0174058_51	eggNOG-mapper	1123263.AUKY01000112_gene2059	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0174058_51	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0174058_51	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0174058_52	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174058_52	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-0174058_52	eggNOG-mapper	1123263.AUKY01000112_gene2060	phage terminase, large subunit	NA
UHGV-0174058_52	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174058_52	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0174058_53	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0174058_53	Structural annotation	PF19962	NA	NA