UHGV-0174061

Genome information

Genome length 70,425 bps

CDS count 99

Completeness 84.79% (medium-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174061
vOTU ID	vOTU-022474
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581324
BioSample	SAMN09781751
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.3
Jumbo phage	No

Genome content
Genome length	70,425 bps
GC content	39.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	99
CDS density	89.12%
Average CDS length	636.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174061_2	PHROG	phrog_11619	DNA methyltransferase	other
UHGV-0174061_2	UniRef90	UniRef90_A0A3R6HG97	Adenine-specific DNA methylase	NA
UHGV-0174061_2	eggNOG-mapper	1193128.A200_07829	rRNA (guanine-N2-)-methyltransferase activity	NA
UHGV-0174061_2	COG	COG0742	16S rRNA G966 N2-methylase RsmD	NA
UHGV-0174061_2	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0174061_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174061_3	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0174061_3	UniRef90	UniRef90_A0A7H1MQH3	PBSX family phage terminase large subunit	NA
UHGV-0174061_3	eggNOG-mapper	1227266.HMPREF1551_00524	Phage terminase, large subunit, PBSX family	NA
UHGV-0174061_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0174061_3	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0174061_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0174061_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174061_3	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0174061_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-0174061_4	UniRef90	UniRef90_A0A7H1MQH2	Phage portal protein	NA
UHGV-0174061_4	eggNOG-mapper	1121100.JCM6294_1089	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0174061_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0174061_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0174061_5	PHROG	phrog_16625	NA	unknown function
UHGV-0174061_5	UniRef90	UniRef90_A0A7H1MQH1	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0174061_5	eggNOG-mapper	445970.ALIPUT_02658	NA	NA
UHGV-0174061_5	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0174061_5	Structural annotation	PF03496, PF06152, MF_04139, NF040688	NA	NA
UHGV-0174061_6	PHROG	phrog_19606	NA	unknown function
UHGV-0174061_6	eggNOG-mapper	619693.HMPREF6745_2521	NA	NA
UHGV-0174061_7	KOfam	K05521	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	NA
UHGV-0174061_7	PHROG	phrog_6572	ADP-ribosylglycohydrolase	other
UHGV-0174061_7	UniRef90	UniRef90_A0A7H1MQG9	ADP-ribosylglycohydrolase	NA
UHGV-0174061_7	eggNOG-mapper	445970.ALIPUT_02656	ADP-ribosylglycohydrolase	NA
UHGV-0174061_7	Pfam	PF03747	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
UHGV-0174061_7	COG	COG1397	ADP-ribosylglycohydrolase	NA
UHGV-0174061_7	Structural annotation	PF03747, TIGR02662, COG1397	NA	NA
UHGV-0174061_13	eggNOG-mapper	272562.CA_C1147	NA	NA
UHGV-0174061_16	Structural annotation	PF13371, TIGR02795, COG4259	NA	NA
UHGV-0174061_17	Structural annotation	TIGR03066	NA	NA
UHGV-0174061_18	Structural annotation	PF13525, MF_02066, TIGR02552, COG1729	NA	NA
UHGV-0174061_21	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0174061_21	UniRef90	UniRef90_A0A7H1MQG0	Bro-N domain-containing protein	NA
UHGV-0174061_21	eggNOG-mapper	1347393.HG726026_gene2597	BRO family, N-terminal domain	NA
UHGV-0174061_21	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0174061_21	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0174061_21	COG	COG3617	Prophage antirepressor	NA
UHGV-0174061_21	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0174061_27	Structural annotation	PF18852	NA	NA
UHGV-0174061_31	PHROG	phrog_824	NA	unknown function
UHGV-0174061_31	UniRef90	UniRef90_A0A7H1MQE6	VRR-NUC domain-containing protein	NA
UHGV-0174061_31	eggNOG-mapper	1229276.DI53_1617	VRR_NUC	NA
UHGV-0174061_31	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0174061_36	UniRef90	UniRef90_A0A7H1MQE1	Helix-turn-helix domain-containing protein	NA
UHGV-0174061_36	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0174061_36	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0174061_36	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0174061_36	Structural annotation	PF02796, NF040595	NA	NA
UHGV-0174061_39	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0174061_40	PHROG	phrog_19572	NA	unknown function
UHGV-0174061_40	UniRef90	UniRef90_A0A3R6I0A2	NA	NA
UHGV-0174061_40	eggNOG-mapper	537011.PREVCOP_04244	NA	NA
UHGV-0174061_40	Pfam	PF14902	NA	DUF4494
UHGV-0174061_40	Structural annotation	PF14902	NA	NA
UHGV-0174061_41	PHROG	phrog_36980	NA	unknown function
UHGV-0174061_41	eggNOG-mapper	470145.BACCOP_01160	NA	NA
UHGV-0174061_42	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174061_42	UniRef90	UniRef90_L0P6F5	HNH endonuclease	NA
UHGV-0174061_42	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0174061_42	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0174061_42	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0174061_42	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0174061_42	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0174061_43	UniRef90	UniRef90_A0A7H1MQD5	NA	NA
UHGV-0174061_43	eggNOG-mapper	445970.ALIPUT_02650	NA	NA
UHGV-0174061_43	Structural annotation	PF12987	NA	NA
UHGV-0174061_46	Structural annotation	PF20024, NF041413, COG0640	NA	NA
UHGV-0174061_49	Structural annotation	PF04480, NF007294, COG3727	NA	NA
UHGV-0174061_52	PHROG	phrog_236	nucleotide kinase	other
UHGV-0174061_52	UniRef90	UniRef90_UPI001D179E87	NA	NA
UHGV-0174061_52	eggNOG-mapper	525268.HMPREF0308_2070	NA	NA
UHGV-0174061_52	Pfam	PF11753	NA	DUF3310
UHGV-0174061_52	Structural annotation	PF19881	NA	NA
UHGV-0174061_53	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0174061_53	UniRef90	UniRef90_A0A415VE06	Phage antirepressor Ant	NA
UHGV-0174061_53	eggNOG-mapper	1347393.HG726022_gene3608	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0174061_53	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0174061_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0174061_53	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0174061_53	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0174061_54	PHROG	phrog_953	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174061_54	UniRef90	UniRef90_A0A897I2R4	AP2/ERF domain-containing protein	NA
UHGV-0174061_54	eggNOG-mapper	1235800.C819_00973	NA	NA
UHGV-0174061_54	Structural annotation	PF00847, PF14311	NA	NA
UHGV-0174061_55	PHROG	phrog_5824	NA	unknown function
UHGV-0174061_56	PHROG	phrog_9196	NA	unknown function
UHGV-0174061_56	Structural annotation	PF21430	NA	NA
UHGV-0174061_57	PHROG	phrog_29	major head protein	head and packaging
UHGV-0174061_57	UniRef90	UniRef90_A0A1H4E7R0	Phage major capsid protein E	NA
UHGV-0174061_57	eggNOG-mapper	1227266.HMPREF1551_00512	NA	NA
UHGV-0174061_57	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0174061_58	Structural annotation	PF20449	NA	NA
UHGV-0174061_59	Structural annotation	PF19586, TIGR01563	NA	NA
UHGV-0174061_60	PHROG	phrog_5377	NA	unknown function
UHGV-0174061_60	eggNOG-mapper	357276.EL88_12790	NA	NA
UHGV-0174061_61	Structural annotation	PF05657	NA	NA
UHGV-0174061_62	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0174061_65	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0174061_65	PHROG	phrog_14295	NA	unknown function
UHGV-0174061_65	UniRef90	UniRef90_A0A1H4E3P0	Chromosome segregation ATPase	NA
UHGV-0174061_65	eggNOG-mapper	585502.HMPREF0645_2633	tape measure	NA
UHGV-0174061_65	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0174061_65	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0174061_66	PHROG	phrog_6305	tail protein	tail
UHGV-0174061_66	UniRef90	UniRef90_F3QSN0	Conserved domain protein	NA
UHGV-0174061_66	eggNOG-mapper	357276.EL88_22740	NA	NA
UHGV-0174061_66	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0174061_67	PHROG	phrog_17422	NA	unknown function
UHGV-0174061_67	eggNOG-mapper	1392486.JIAF01000004_gene815	NA	NA
UHGV-0174061_67	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0174061_68	eggNOG-mapper	742727.HMPREF9447_04849	NA	NA
UHGV-0174061_68	Structural annotation	PF16407, MF_04116, NF033597	NA	NA
UHGV-0174061_69	eggNOG-mapper	742727.HMPREF9447_04847	NA	NA
UHGV-0174061_69	Structural annotation	PF02010, TIGR03517, COG1361	NA	NA
UHGV-0174061_70	PHROG	phrog_5302	tail protein	tail
UHGV-0174061_70	eggNOG-mapper	742727.HMPREF9447_04850	NA	NA
UHGV-0174061_71	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0174061_71	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0174061_71	UniRef90	UniRef90_A0A7M1RUH1	RNA binding protein	NA
UHGV-0174061_71	eggNOG-mapper	1492737.FEM08_13460	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0174061_71	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0174061_71	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0174061_71	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0174061_71	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0174061_74	PHROG	phrog_27485	NA	unknown function
UHGV-0174061_74	UniRef90	UniRef90_UPI001C2B9C90	carbohydrate binding domain-containing protein	NA
UHGV-0174061_74	eggNOG-mapper	1437603.BMON_1128	NA	NA
UHGV-0174061_74	Structural annotation	PF03944, PF03921, NF033675, COG4266	NA	NA
UHGV-0174061_76	UniRef90	UniRef90_A0A3R5YJY4	DNA-binding protein	NA
UHGV-0174061_76	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0174061_76	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0174061_77	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-0174061_81	UniRef90	UniRef90_J9GTV3	Membrane protein	NA
UHGV-0174061_81	eggNOG-mapper	1121097.JCM15093_2703	NA	NA
UHGV-0174061_82	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0174061_82	PHROG	phrog_181	endolysin	lysis
UHGV-0174061_82	UniRef90	UniRef90_A0A7H1MQA5	Glycoside hydrolase family 19 protein	NA
UHGV-0174061_82	eggNOG-mapper	160488.PP_3066	hmm pf00182	NA
UHGV-0174061_82	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0174061_82	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0174061_82	Structural annotation	PF00182, COG3179	NA	NA
UHGV-0174061_84	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0174061_84	eggNOG-mapper	1121100.JCM6294_549	NA	NA
UHGV-0174061_87	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0174061_87	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0174061_87	UniRef90	UniRef90_A0A7H1MQA2	MBL fold metallo-hydrolase	NA
UHGV-0174061_87	eggNOG-mapper	357276.EL88_12605	Metallo-beta-lactamase superfamily	NA
UHGV-0174061_87	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0174061_87	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0174061_87	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0174061_88	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174061_88	UniRef90	UniRef90_A0A7H1MQA1	Recombinase RecT	NA
UHGV-0174061_88	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0174061_88	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0174061_89	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0174061_89	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174061_89	UniRef90	UniRef90_A0A415VGU6	AAA_23 domain-containing protein	NA
UHGV-0174061_89	eggNOG-mapper	457424.BFAG_02387	P-loop containing region of AAA domain	NA
UHGV-0174061_89	Pfam	PF13476	AAA domain	AAA_23
UHGV-0174061_89	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0174061_89	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0174061_90	Structural annotation	PF20338	NA	NA
UHGV-0174061_91	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174061_91	eggNOG-mapper	1122992.CBQQ010000072_gene1965	NA	NA
UHGV-0174061_92	UniRef90	UniRef90_A0A415VGT1	DNA-binding protein	NA
UHGV-0174061_92	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0174061_92	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0174061_94	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0174061_94	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0174061_94	UniRef90	UniRef90_A0A7H1MQ96	Helix-turn-helix transcriptional regulator	NA
UHGV-0174061_94	eggNOG-mapper	1122985.HMPREF1991_02233	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0174061_94	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0174061_94	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0174061_94	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0174061_95	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0174061_95	PHROG	phrog_1	integrase	integration and excision
UHGV-0174061_95	UniRef90	UniRef90_A0A7H1MQK8	Tyrosine-type recombinase/integrase	NA
UHGV-0174061_95	eggNOG-mapper	272559.BF9343_2363	Phage integrase SAM-like domain	NA
UHGV-0174061_95	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0174061_95	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0174061_95	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174061_95	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174061_95	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0174061_97	Structural annotation	TIGR00739	NA	NA
UHGV-0174061_99	PHROG	phrog_625	NA	unknown function
UHGV-0174061_99	UniRef90	UniRef90_A0A6I1RWR8	ASCH domain-containing protein	NA
UHGV-0174061_99	eggNOG-mapper	926549.KI421517_gene2497	NA	NA
UHGV-0174061_99	Structural annotation	PF12961	NA	NA