UHGV-0174074

Genome information

Genome length 12,787 bps

CDS count 15

Completeness 93.79% (high-quality)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174074
vOTU ID	vOTU-063420
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584765
BioSample	SAMN09781790
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.79% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.25
Jumbo phage	No

Genome content
Genome length	12,787 bps
GC content	39.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	15
CDS density	94.72%
Average CDS length	815.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174074_3	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0174074_3	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0174074_3	UniRef90	UniRef90_A0A843GHP1	DNA-directed DNA polymerase	NA
UHGV-0174074_3	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0174074_3	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0174074_4	Structural annotation	PF17427	NA	NA
UHGV-0174074_5	PHROG	phrog_2150	terminase	head and packaging
UHGV-0174074_5	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0174074_5	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0174074_5	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0174074_5	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0174074_8	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0174074_9	Structural annotation	PF20934	NA	NA
UHGV-0174074_10	PHROG	phrog_7698	endolysin	lysis
UHGV-0174074_10	UniRef90	UniRef90_A0A3B9GPW1	Cpl-7 domain-containing protein	NA
UHGV-0174074_10	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0174074_10	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0174074_10	Structural annotation	PF08230	NA	NA
UHGV-0174074_11	UniRef90	UniRef90_A0A3B9GPY5	Phage_lysozyme2 domain-containing protein	NA
UHGV-0174074_11	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0174074_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0174074_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0174074_11	Structural annotation	PF18013	NA	NA
UHGV-0174074_12	PHROG	phrog_2038	upper collar connector	connector
UHGV-0174074_12	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0174074_12	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0174074_12	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0174074_12	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0174074_14	eggNOG-mapper	355246.Q333D4_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA