UHGV-0174081

Genome information

Genome length 57,366 bps

CDS count 98

Completeness 99.54% (high-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174081
vOTU ID	vOTU-061398
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589597
BioSample	SAMN09781760
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.54% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.65
Jumbo phage	No

Genome content
Genome length	57,366 bps
GC content	48.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	98
CDS density	85.95%
Average CDS length	505.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174081_4	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0174081_8	PHROG	phrog_14275	NA	unknown function
UHGV-0174081_8	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0174081_8	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0174081_8	Structural annotation	PF13157, MF_01537, NF007875, COG3123	NA	NA
UHGV-0174081_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0174081_9	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0174081_9	UniRef90	UniRef90_A0A1Y4EUA0	Bro-N domain-containing protein	NA
UHGV-0174081_9	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0174081_9	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0174081_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0174081_9	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0174081_10	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0174081_10	Structural annotation	PF01402, NF041284, COG4710	NA	NA
UHGV-0174081_12	Structural annotation	PF20075	NA	NA
UHGV-0174081_13	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0174081_13	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0174081_13	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0174081_13	eggNOG-mapper	411469.EUBHAL_01860	Resolvase, N terminal domain	NA
UHGV-0174081_13	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0174081_13	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0174081_13	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0174081_14	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0174081_14	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0174081_14	UniRef90	UniRef90_UPI00067F3ABF	RNA-splicing ligase RtcB	NA
UHGV-0174081_14	eggNOG-mapper	1211844.CBLM010000044_gene358	tRNA-splicing ligase RtcB	NA
UHGV-0174081_14	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0174081_14	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0174081_14	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0174081_16	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0174081_16	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0174081_16	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0174081_16	COG	COG5410	NA	NA
UHGV-0174081_16	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0174081_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0174081_18	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0174081_18	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0174081_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0174081_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0174081_19	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0174081_19	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0174081_19	Structural annotation	PF14359, NF040588, COG3613	NA	NA
UHGV-0174081_22	PHROG	phrog_29	major head protein	head and packaging
UHGV-0174081_22	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0174081_22	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0174081_22	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0174081_22	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0174081_23	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0174081_23	Structural annotation	TIGR01560	NA	NA
UHGV-0174081_24	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0174081_25	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0174081_26	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0174081_27	PHROG	phrog_158	major tail protein	tail
UHGV-0174081_27	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0174081_27	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0174081_27	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0174081_28	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0174081_28	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0174081_28	Pfam	PF16478	NA	DUF5055
UHGV-0174081_28	Structural annotation	PF16478	NA	NA
UHGV-0174081_29	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0174081_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0174081_30	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0174081_30	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0174081_31	PHROG	phrog_1194	NA	unknown function
UHGV-0174081_31	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0174081_31	Pfam	PF20458	NA	DUF6711
UHGV-0174081_31	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0174081_32	PHROG	phrog_13879	NA	unknown function
UHGV-0174081_32	UniRef90	UniRef90_A0A843H6J9	Dockerin type I repeat-containing protein	NA
UHGV-0174081_32	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0174081_32	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0174081_33	PHROG	phrog_18725	NA	unknown function
UHGV-0174081_33	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0174081_35	PHROG	phrog_23587	NA	unknown function
UHGV-0174081_35	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0174081_35	COG	COG5492	NA	NA
UHGV-0174081_35	Structural annotation	MF_04106	NA	NA
UHGV-0174081_36	PHROG	phrog_24267	NA	unknown function
UHGV-0174081_36	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0174081_36	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-0174081_36	Structural annotation	COG4675	NA	NA
UHGV-0174081_38	Structural annotation	NF040910	NA	NA
UHGV-0174081_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0174081_39	PHROG	phrog_291	endolysin	lysis
UHGV-0174081_39	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0174081_39	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0174081_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0174081_39	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0174081_39	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0174081_40	PHROG	phrog_1863	NA	unknown function
UHGV-0174081_40	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0174081_41	PHROG	phrog_15303	NA	unknown function
UHGV-0174081_44	PHROG	phrog_16490	NA	unknown function
UHGV-0174081_44	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0174081_45	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0174081_46	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0174081_47	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0174081_47	UniRef90	UniRef90_A0A161P7Y2	Phage antirepressor	NA
UHGV-0174081_47	eggNOG-mapper	1122146.AUHP01000010_gene1045	BRO family, N-terminal domain	NA
UHGV-0174081_47	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0174081_47	COG	COG3617	Prophage antirepressor	NA
UHGV-0174081_47	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0174081_48	UniRef90	UniRef90_UPI0009300B98	CopG family transcriptional regulator	NA
UHGV-0174081_48	eggNOG-mapper	478749.BRYFOR_07643	NA	NA
UHGV-0174081_48	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0174081_49	Structural annotation	PF07878	NA	NA
UHGV-0174081_51	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0174081_51	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0174081_51	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0174081_51	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0174081_51	Pfam	PF13614	AAA domain	AAA_31
UHGV-0174081_51	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0174081_51	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0174081_52	PHROG	phrog_60	NA	unknown function
UHGV-0174081_52	UniRef90	UniRef90_A0A316RLR0	NA	NA
UHGV-0174081_52	Pfam	PF04448	NA	DUF551
UHGV-0174081_52	Structural annotation	NF041588	NA	NA
UHGV-0174081_53	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174081_53	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0174081_53	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0174081_53	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0174081_53	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0174081_53	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0174081_53	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0174081_54	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0174081_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174081_54	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174081_54	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174081_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174081_59	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0174081_59	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0174081_59	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0174081_59	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174081_60	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0174081_60	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0174081_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174081_60	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0174081_61	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0174081_61	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0174081_61	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0174081_61	eggNOG-mapper	1449343.JQLQ01000002_gene1368	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0174081_61	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0174081_61	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0174081_61	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0174081_61	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0174081_61	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0174081_62	Structural annotation	PF10922	NA	NA
UHGV-0174081_63	Structural annotation	TIGR03826	NA	NA
UHGV-0174081_65	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0174081_65	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0174081_66	Structural annotation	PF14143	NA	NA
UHGV-0174081_67	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0174081_67	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0174081_69	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174081_69	UniRef90	UniRef90_A0A3G2N781	HNH endonuclease	NA
UHGV-0174081_69	eggNOG-mapper	232237.Q7Y5F9_9CAUD	HNH endonuclease	NA
UHGV-0174081_69	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0174081_70	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174081_70	UniRef90	UniRef90_UPI00130EB09C	ERF family protein	NA
UHGV-0174081_70	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0174081_70	Pfam	PF04404	ERF superfamily	ERF
UHGV-0174081_70	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0174081_71	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174081_71	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174081_71	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0174081_71	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0174081_71	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174081_71	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174081_71	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174081_71	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174081_71	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0174081_72	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0174081_72	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0174081_72	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0174081_72	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0174081_72	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0174081_74	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174081_74	UniRef90	UniRef90_UPI000C78AB6D	Holliday junction resolvase RecU	NA
UHGV-0174081_74	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0174081_74	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0174081_77	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0174081_77	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0174081_79	Structural annotation	PF03465, COG2331	NA	NA
UHGV-0174081_81	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-0174081_83	Pfam	PF04448	NA	DUF551
UHGV-0174081_84	Structural annotation	PF16677	NA	NA
UHGV-0174081_85	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0174081_85	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0174081_85	UniRef90	UniRef90_A0A1Y4KU01	Resolvase	NA
UHGV-0174081_85	eggNOG-mapper	742738.HMPREF9460_01133	Resolvase, N terminal domain	NA
UHGV-0174081_85	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0174081_85	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-0174081_85	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0174081_86	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0174081_86	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0174081_86	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0174081_86	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0174081_91	Structural annotation	NF041588	NA	NA
UHGV-0174081_94	PHROG	phrog_13999	NA	unknown function
UHGV-0174081_94	eggNOG-mapper	1391428.V5KT07_9CAUD	NA	NA
UHGV-0174081_95	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0174081_95	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0174081_95	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0174081_95	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0174081_95	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0174081_95	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0174081_96	PHROG	phrog_15768	NA	unknown function
UHGV-0174081_96	UniRef90	UniRef90_A0A6N7WKT0	NA	NA
UHGV-0174081_96	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0174081_96	Pfam	PF19808	NA	DUF6291
UHGV-0174081_96	Structural annotation	PF19808	NA	NA
UHGV-0174081_97	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0174081_97	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0174081_97	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-0174081_97	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0174081_97	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0174081_97	COG	COG0305	Replicative DNA helicase	NA
UHGV-0174081_97	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0174081_98	PHROG	phrog_419	NA	unknown function
UHGV-0174081_98	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-0174081_98	eggNOG-mapper	768486.EHR_02665	NA	NA
UHGV-0174081_98	Structural annotation	PF14083	NA	NA