UHGV-0174087

Genome information

Genome length 41,350 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174087
vOTU ID	vOTU-061400
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589605
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.11
Jumbo phage	No

Genome content
Genome length	41,350 bps
GC content	53.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.45%
Average CDS length	695.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174087_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174087_2	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0174087_2	UniRef90	UniRef90_A0A1M5YHQ5	Phage terminase large subunit	NA
UHGV-0174087_2	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0174087_2	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0174087_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174087_2	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0174087_4	PHROG	phrog_156	portal protein	head and packaging
UHGV-0174087_4	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0174087_4	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0174087_5	PHROG	phrog_4105	NA	unknown function
UHGV-0174087_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0174087_7	PHROG	phrog_20388	endolysin	lysis
UHGV-0174087_7	UniRef90	UniRef90_R5HQL6	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0174087_7	eggNOG-mapper	1226322.HMPREF1545_04024	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174087_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0174087_7	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0174087_7	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0174087_8	PHROG	phrog_14606	NA	unknown function
UHGV-0174087_9	PHROG	phrog_422	major head protein	head and packaging
UHGV-0174087_9	UniRef90	UniRef90_A0A8J6JH37	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0174087_9	eggNOG-mapper	755731.Clo1100_2434	NA	NA
UHGV-0174087_9	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0174087_10	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0174087_10	Structural annotation	PF11650	NA	NA
UHGV-0174087_11	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0174087_11	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0174087_11	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0174087_12	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0174087_12	PHROG	phrog_5302	tail protein	tail
UHGV-0174087_12	UniRef90	UniRef90_A0A417HW08	Collagen-like protein	NA
UHGV-0174087_12	eggNOG-mapper	1203606.HMPREF1526_00261	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0174087_12	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0174087_12	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0174087_12	Structural annotation	PF07210, PF17737, TIGR03000	NA	NA
UHGV-0174087_14	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0174087_14	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0174087_14	UniRef90	UniRef90_A0A2V2FIK6	Reverse transcriptase domain-containing protein	NA
UHGV-0174087_14	eggNOG-mapper	1492737.FEM08_13460	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0174087_14	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0174087_14	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0174087_14	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0174087_14	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0174087_16	PHROG	phrog_27545	NA	unknown function
UHGV-0174087_16	UniRef90	UniRef90_A0A8D9UHK2	Chitin oligosaccharide deacetylase	NA
UHGV-0174087_16	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-0174087_16	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0174087_16	Structural annotation	PF14600	NA	NA
UHGV-0174087_17	UniRef90	UniRef90_A0A1Y3RJS2	Sigma70_r4_2 domain-containing protein	NA
UHGV-0174087_20	PHROG	phrog_21483	NA	unknown function
UHGV-0174087_20	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0174087_21	UniRef90	UniRef90_A0A318L9Z0	MuF_C domain-containing protein	NA
UHGV-0174087_21	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0174087_21	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0174087_23	PHROG	phrog_6721	NA	unknown function
UHGV-0174087_23	eggNOG-mapper	665950.HMPREF1025_01974	NA	NA
UHGV-0174087_23	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0174087_24	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0174087_24	UniRef90	UniRef90_UPI0019572D92	NA	NA
UHGV-0174087_24	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0174087_24	Pfam	PF14359	NA	DUF4406
UHGV-0174087_24	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0174087_25	PHROG	phrog_474	phosphofructokinase	other
UHGV-0174087_25	UniRef90	UniRef90_A0A7X6GRJ7	NA	NA
UHGV-0174087_25	eggNOG-mapper	1123247.AUIJ01000002_gene2234	NA	NA
UHGV-0174087_25	Pfam	PF19905	NA	DUF6378
UHGV-0174087_25	Structural annotation	PF19905	NA	NA
UHGV-0174087_29	PHROG	phrog_7839	NA	unknown function
UHGV-0174087_29	eggNOG-mapper	665956.HMPREF1032_03091	NA	NA
UHGV-0174087_29	Structural annotation	PF08860	NA	NA
UHGV-0174087_30	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0174087_30	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0174087_30	UniRef90	UniRef90_A0A3L7P3W4	dCTP deaminase, dUMP-forming	NA
UHGV-0174087_30	eggNOG-mapper	546269.HMPREF0389_00105	Belongs to the dCTP deaminase family	NA
UHGV-0174087_30	Pfam	PF06559	2'-deoxycytidine 5'-triphosphate deaminase (DCD)	DCD
UHGV-0174087_30	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0174087_30	COG	COG0717	dCTP deaminase	NA
UHGV-0174087_30	HAMAP	MF_00146	dCTP deaminase, dUMP-forming [dcd]	NA
UHGV-0174087_30	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0174087_31	UniRef90	UniRef90_A0A352NBH9	NA	NA
UHGV-0174087_31	eggNOG-mapper	1235800.C819_00506	NA	NA
UHGV-0174087_31	Structural annotation	PF19789	NA	NA
UHGV-0174087_32	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0174087_32	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174087_32	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0174087_32	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0174087_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0174087_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0174087_33	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0174087_33	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0174087_33	UniRef90	UniRef90_UPI0018973262	AAA family ATPase	NA
UHGV-0174087_33	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0174087_33	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0174087_33	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0174087_33	COG	COG0305	Replicative DNA helicase	NA
UHGV-0174087_33	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0174087_34	PHROG	phrog_15768	NA	unknown function
UHGV-0174087_34	UniRef90	UniRef90_UPI0002D17810	helix-turn-helix domain-containing protein	NA
UHGV-0174087_34	eggNOG-mapper	658086.HMPREF0994_02124	NA	NA
UHGV-0174087_34	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0174087_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0174087_34	Structural annotation	PF04492, MF_01819, NF040939, COG3355	NA	NA
UHGV-0174087_36	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0174087_36	Structural annotation	PF05037	NA	NA
UHGV-0174087_38	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174087_38	UniRef90	UniRef90_A0A8J6P193	AAA family ATPase	NA
UHGV-0174087_38	eggNOG-mapper	1449050.JNLE01000005_gene3946	AAA domain	NA
UHGV-0174087_38	Pfam	PF13479	AAA domain	AAA_24
UHGV-0174087_38	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0174087_41	Structural annotation	PF19157	NA	NA
UHGV-0174087_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0174087_45	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0174087_45	UniRef90	UniRef90_A0A6N2R468	Bro-N domain-containing protein	NA
UHGV-0174087_45	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0174087_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0174087_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0174087_45	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0174087_46	UniRef90	UniRef90_UPI000B8B6894	helix-turn-helix domain-containing protein	NA
UHGV-0174087_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174087_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174087_47	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0174087_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174087_47	UniRef90	UniRef90_UPI000E31F980	helix-turn-helix domain-containing protein	NA
UHGV-0174087_47	eggNOG-mapper	1203602.HMPREF1527_01116	Peptidase S24-like	NA
UHGV-0174087_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174087_47	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0174087_47	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0174087_48	KOfam	K14059	int; integrase	NA
UHGV-0174087_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0174087_48	UniRef90	UniRef90_UPI00082B31A6	tyrosine-type recombinase/integrase	NA
UHGV-0174087_48	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0174087_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174087_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174087_48	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0174087_49	eggNOG-mapper	1203606.HMPREF1526_02295	CRISPR-associated protein Cse2 (CRISPR_cse2)	NA
UHGV-0174087_51	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0174087_51	UniRef90	UniRef90_A0A395WEU5	Antirestriction protein ArdA	NA
UHGV-0174087_51	eggNOG-mapper	1231377.C426_0820	Antirestriction protein (ArdA)	NA
UHGV-0174087_51	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-0174087_51	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-0174087_51	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0174087_51	Structural annotation	PF07275, COG4734	NA	NA
UHGV-0174087_53	Structural annotation	PF10723	NA	NA
UHGV-0174087_54	Structural annotation	PF16677	NA	NA