UHGV-0174088

Genome information

Genome length 40,934 bps

CDS count 54

Completeness 97.82% (high-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174088
vOTU ID	vOTU-061401
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589606
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.82% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.58
Jumbo phage	No

Genome content
Genome length	40,934 bps
GC content	58.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.41%
Average CDS length	710.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174088_2	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174088_2	UniRef90	UniRef90_A0A845R8D4	NA	NA
UHGV-0174088_2	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0174088_2	Pfam	PF06356	NA	DUF1064
UHGV-0174088_2	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0174088_4	Structural annotation	PF10013	NA	NA
UHGV-0174088_7	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174088_7	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0174088_7	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0174088_9	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0174088_9	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0174088_9	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0174088_9	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0174088_9	Structural annotation	PF16677	NA	NA
UHGV-0174088_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174088_10	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0174088_10	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0174088_10	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0174088_10	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0174088_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174088_10	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0174088_11	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0174088_11	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-0174088_11	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0174088_12	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0174088_12	UniRef90	UniRef90_R5ILW4	Peptidase S74 domain-containing protein	NA
UHGV-0174088_12	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-0174088_12	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0174088_12	Structural annotation	PF10248	NA	NA
UHGV-0174088_14	PHROG	phrog_156	portal protein	head and packaging
UHGV-0174088_14	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0174088_14	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0174088_15	PHROG	phrog_13908	NA	unknown function
UHGV-0174088_15	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0174088_16	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0174088_16	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0174088_16	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0174088_16	Pfam	PF13252	NA	DUF4043
UHGV-0174088_16	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0174088_16	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0174088_18	PHROG	phrog_12105	NA	unknown function
UHGV-0174088_18	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0174088_19	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-0174088_19	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0174088_20	PHROG	phrog_22978	NA	unknown function
UHGV-0174088_20	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-0174088_20	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0174088_20	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0174088_20	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0174088_21	Structural annotation	PF18962, NF011773	NA	NA
UHGV-0174088_22	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0174088_23	PHROG	phrog_30034	NA	unknown function
UHGV-0174088_23	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0174088_23	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-0174088_24	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0174088_24	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0174088_24	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0174088_24	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0174088_24	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0174088_25	UniRef90	UniRef90_UPI001D07DA55	NA	NA
UHGV-0174088_25	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0174088_25	Pfam	PF19789	NA	DUF6273
UHGV-0174088_25	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0174088_25	Structural annotation	PF19789	NA	NA
UHGV-0174088_26	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0174088_26	Structural annotation	PF14600	NA	NA
UHGV-0174088_27	PHROG	phrog_937	hemolysin	other
UHGV-0174088_27	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0174088_28	PHROG	phrog_443	holin	lysis
UHGV-0174088_28	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-0174088_28	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0174088_28	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0174088_28	Structural annotation	PF16945	NA	NA
UHGV-0174088_29	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0174088_29	PHROG	phrog_670	endolysin	lysis
UHGV-0174088_29	UniRef90	UniRef90_R8W9R7	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0174088_29	eggNOG-mapper	1203606.HMPREF1526_00589	Ami_2	NA
UHGV-0174088_29	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0174088_29	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0174088_29	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0174088_30	Structural annotation	PF14528, PF05204, MF_01420, TIGR00647, COG3780	NA	NA
UHGV-0174088_32	PHROG	phrog_25567	NA	unknown function
UHGV-0174088_32	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0174088_32	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0174088_32	Structural annotation	PF13560, NF040522, COG2944	NA	NA
UHGV-0174088_37	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0174088_37	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0174088_38	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0174088_38	PHROG	phrog_95	integrase	integration and excision
UHGV-0174088_38	UniRef90	UniRef90_A0A3A9FR25	Recombinase family protein	NA
UHGV-0174088_38	eggNOG-mapper	1408437.JNJN01000002_gene1420	Resolvase, N terminal domain	NA
UHGV-0174088_38	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0174088_38	Pfam	PF07508	Recombinase	Recombinase
UHGV-0174088_38	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0174088_38	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0174088_38	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0174088_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174088_39	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0174088_41	eggNOG-mapper	1280706.AUJE01000010_gene628	nuclease	NA
UHGV-0174088_41	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0174088_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174088_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174088_42	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-0174088_42	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0174088_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174088_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174088_42	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174088_50	Pfam	PF04448	NA	DUF551
UHGV-0174088_50	Structural annotation	NF041588	NA	NA
UHGV-0174088_51	PHROG	phrog_3136	NA	unknown function
UHGV-0174088_51	UniRef90	UniRef90_A0A843H9M8	ASCH domain-containing protein	NA
UHGV-0174088_51	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0174088_51	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0174088_52	PHROG	phrog_38832	NA	unknown function
UHGV-0174088_52	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA