UHGV-0174112

Genome information

Genome length 43,887 bps

CDS count 82

Completeness 100.00% (complete)

geNomad score 0.9707

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174112
vOTU ID	vOTU-046508
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592117
BioSample	SAMN09781729
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9707
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.59
Jumbo phage	No

Genome content
Genome length	43,887 bps
GC content	49.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	82
CDS density	90.20%
Average CDS length	488.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174112_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0174112_2	PHROG	phrog_17928	NA	unknown function
UHGV-0174112_2	eggNOG-mapper	338963.Pcar_0531	NA	NA
UHGV-0174112_3	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0174112_3	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0174112_3	UniRef90	UniRef90_A0A3R6X653	Restriction alleviation protein, Lar family	NA
UHGV-0174112_3	eggNOG-mapper	10704.B4UTV4_BP163	NA	NA
UHGV-0174112_3	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0174112_3	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0174112_3	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0174112_3	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0174112_5	PHROG	phrog_924	NA	unknown function
UHGV-0174112_5	UniRef90	UniRef90_UPI001873F304	NA	NA
UHGV-0174112_5	Pfam	PF04448	NA	DUF551
UHGV-0174112_5	Structural annotation	NF041588	NA	NA
UHGV-0174112_6	Pfam	PF20037	NA	DUF6440
UHGV-0174112_6	Structural annotation	PF20037	NA	NA
UHGV-0174112_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174112_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174112_7	UniRef90	UniRef90_UPI000C081F44	helix-turn-helix domain-containing protein	NA
UHGV-0174112_7	eggNOG-mapper	1123405.AUMM01000019_gene2881	sequence-specific DNA binding	NA
UHGV-0174112_7	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0174112_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174112_8	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0174112_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0174112_9	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0174112_9	UniRef90	UniRef90_A0A4R1S4N0	Prophage antirepressor-like protein	NA
UHGV-0174112_9	eggNOG-mapper	563192.HMPREF0179_02955	BRO family, N-terminal domain	NA
UHGV-0174112_9	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0174112_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0174112_9	COG	COG3617	Prophage antirepressor	NA
UHGV-0174112_9	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0174112_10	PHROG	phrog_13126	beta-1,4-glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0174112_10	UniRef90	UniRef90_A0A1Q6Q8L1	Glycosyl transferase family 2	NA
UHGV-0174112_10	eggNOG-mapper	1226322.HMPREF1545_03849	Glycosyl transferase, family 2	NA
UHGV-0174112_10	Pfam	PF00535	Glycosyl transferase family 2	Glycos_transf_2
UHGV-0174112_10	Pfam	PF14559	Tetratricopeptide repeat	TPR_19
UHGV-0174112_10	Pfam	PF07719	Tetratricopeptide repeat	TPR_2
UHGV-0174112_10	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0174112_10	Structural annotation	PF18768, PF13641, MF_00994, MF_00316, TIGR04195, COG0457, COG0463	NA	NA
UHGV-0174112_12	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0174112_13	PHROG	phrog_13890	NA	unknown function
UHGV-0174112_13	UniRef90	UniRef90_A0A6L6LMN7	Antitoxin	NA
UHGV-0174112_13	eggNOG-mapper	97139.C824_00677	NA	NA
UHGV-0174112_13	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0174112_13	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0174112_14	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0174112_14	Structural annotation	PF21291, TIGR02607, COG3093	NA	NA
UHGV-0174112_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174112_19	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0174112_19	UniRef90	UniRef90_H2J4B5	Phage terminase, large subunit, PBSX family	NA
UHGV-0174112_19	eggNOG-mapper	443254.Marpi_0320	Terminase RNAseH like domain	NA
UHGV-0174112_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0174112_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0174112_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0174112_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174112_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0174112_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0174112_20	UniRef90	UniRef90_UPI001CD71C56	phage portal protein	NA
UHGV-0174112_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0174112_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0174112_21	Structural annotation	PF14265	NA	NA
UHGV-0174112_22	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0174112_22	UniRef90	UniRef90_A0A7C7ERB8	NA	NA
UHGV-0174112_22	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0174112_22	Pfam	PF17236	NA	DUF5309
UHGV-0174112_22	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0174112_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174112_26	UniRef90	UniRef90_A0A6H1F582	HK97 gp10 family phage protein	NA
UHGV-0174112_26	eggNOG-mapper	562981.HMPREF0428_01816	NA	NA
UHGV-0174112_31	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0174112_31	UniRef90	UniRef90_S9TWQ7	Phage-like protein	NA
UHGV-0174112_31	eggNOG-mapper	1122918.KB907248_gene4489	minor tail protein	NA
UHGV-0174112_31	COG	COG1511	NA	NA
UHGV-0174112_32	PHROG	phrog_1194	NA	unknown function
UHGV-0174112_32	eggNOG-mapper	1000588.HMPREF9965_1690	NA	NA
UHGV-0174112_32	Pfam	PF20458	NA	DUF6711
UHGV-0174112_32	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0174112_33	eggNOG-mapper	1280696.ATVY01000086_gene2001	NA	NA
UHGV-0174112_34	PHROG	phrog_6616	tail protein	tail
UHGV-0174112_34	UniRef90	UniRef90_A0A1M7NJ96	Chaperone of endosialidase	NA
UHGV-0174112_34	eggNOG-mapper	1305708.M9Q2I5_9CAUD	peptidoglycan catabolic process	NA
UHGV-0174112_34	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0174112_34	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0174112_36	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0174112_36	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0174112_36	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0174112_36	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0174112_36	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0174112_37	eggNOG-mapper	478749.BRYFOR_05053	extracellular matrix structural constituent	NA
UHGV-0174112_37	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0174112_37	COG	COG1361	S-layer protein MJ0795, predicted component of type IV pili-like system	NA
UHGV-0174112_39	Structural annotation	PF14600, COG3979	NA	NA
UHGV-0174112_40	PHROG	phrog_918	NA	unknown function
UHGV-0174112_40	UniRef90	UniRef90_Q5ULN6	Orf78	NA
UHGV-0174112_40	eggNOG-mapper	298338.Q5ULN6_9CAUD	NA	NA
UHGV-0174112_40	Pfam	PF19791	NA	DUF6275
UHGV-0174112_40	Structural annotation	PF19791	NA	NA
UHGV-0174112_41	Structural annotation	PF12988	NA	NA
UHGV-0174112_42	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0174112_42	PHROG	phrog_329	minor tail protein	tail
UHGV-0174112_42	UniRef90	UniRef90_A0A2V2EEK9	NlpC/P60 domain-containing protein	NA
UHGV-0174112_42	eggNOG-mapper	1089546.AQUI01000002_gene3251	NlpC/P60 family	NA
UHGV-0174112_42	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0174112_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0174112_42	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0174112_42	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0174112_43	PHROG	phrog_1863	NA	unknown function
UHGV-0174112_43	UniRef90	UniRef90_A0A7X2Z1D1	t-SNARE coiled-coil homology domain-containing protein	NA
UHGV-0174112_43	eggNOG-mapper	1122918.KB907250_gene3599	NA	NA
UHGV-0174112_44	PHROG	phrog_881	holin	lysis
UHGV-0174112_44	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0174112_44	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0174112_44	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0174112_44	Structural annotation	PF16938	NA	NA
UHGV-0174112_46	PHROG	phrog_21718	NA	unknown function
UHGV-0174112_48	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0174112_49	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-0174112_51	KOfam	K14059	int; integrase	NA
UHGV-0174112_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0174112_51	UniRef90	UniRef90_UPI001C0F402D	site-specific integrase	NA
UHGV-0174112_51	eggNOG-mapper	643648.Slip_1975	Belongs to the 'phage' integrase family	NA
UHGV-0174112_51	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0174112_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174112_51	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0174112_51	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0174112_52	UniRef90	UniRef90_A0A1Q6L177	HTH cro/C1-type domain-containing protein	NA
UHGV-0174112_52	eggNOG-mapper	1280692.AUJL01000011_gene3216	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0174112_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174112_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174112_52	Structural annotation	PF13560, MF_00535, NF041677, COG1396	NA	NA
UHGV-0174112_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174112_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174112_53	UniRef90	UniRef90_A0A7M3SAN0	DNA-binding phage protein	NA
UHGV-0174112_53	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-0174112_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174112_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174112_55	Structural annotation	PF09202, MF_01177, TIGR02702, COG1846	NA	NA
UHGV-0174112_58	UniRef90	UniRef90_UPI0013794FA4	helix-turn-helix domain-containing protein	NA
UHGV-0174112_58	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0174112_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174112_59	UniRef90	UniRef90_UPI0013798007	helix-turn-helix domain-containing protein	NA
UHGV-0174112_59	eggNOG-mapper	1226322.HMPREF1545_03719	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174112_59	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0174112_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174112_59	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0174112_63	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0174112_67	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0174112_67	UniRef90	UniRef90_UPI00189A2233	siphovirus Gp157 family protein	NA
UHGV-0174112_67	eggNOG-mapper	903814.ELI_1272	Siphovirus Gp157	NA
UHGV-0174112_67	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0174112_67	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0174112_68	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174112_68	UniRef90	UniRef90_A0A843HUJ5	NA	NA
UHGV-0174112_68	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0174112_68	Pfam	PF06378	NA	DUF1071
UHGV-0174112_68	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0174112_69	PHROG	phrog_1389	NA	unknown function
UHGV-0174112_69	eggNOG-mapper	1280692.AUJL01000025_gene2094	NA	NA
UHGV-0174112_69	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0174112_70	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0174112_70	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174112_70	UniRef90	UniRef90_A0A498CPV0	HNH endonuclease	NA
UHGV-0174112_70	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0174112_70	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0174112_71	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174112_71	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174112_71	UniRef90	UniRef90_A0A316PZZ8	Single-stranded DNA-binding protein	NA
UHGV-0174112_71	eggNOG-mapper	1042163.BRLA_c046430	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0174112_71	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174112_71	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174112_71	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174112_71	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174112_71	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0174112_72	COG	COG4443	NA	NA
UHGV-0174112_73	PHROG	phrog_15768	NA	unknown function
UHGV-0174112_73	UniRef90	UniRef90_A0A1H8R574	Helix-turn-helix domain-containing protein	NA
UHGV-0174112_73	eggNOG-mapper	1158294.JOMI01000001_gene1618	NA	NA
UHGV-0174112_73	Structural annotation	PF04492, MF_01177, NF041413, COG5625	NA	NA
UHGV-0174112_74	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0174112_74	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0174112_74	UniRef90	UniRef90_A0A1C6FK91	Replicative DNA helicase	NA
UHGV-0174112_74	eggNOG-mapper	1347392.CCEZ01000011_gene2447	Participates in initiation and elongation during chromosome replication	NA
UHGV-0174112_74	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0174112_74	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0174112_74	COG	COG0305	Replicative DNA helicase	NA
UHGV-0174112_74	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0174112_76	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174112_76	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-0174112_76	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0174112_79	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0174112_79	eggNOG-mapper	926561.KB900623_gene754	NA	NA
UHGV-0174112_81	PHROG	phrog_1233	NA	unknown function
UHGV-0174112_81	UniRef90	UniRef90_UPI001BDDD96D	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0174112_81	eggNOG-mapper	1131462.DCF50_p1813	NA	NA