UHGV-0174163

Genome information

Genome length 36,810 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174163
vOTU ID	vOTU-061254
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587912
BioSample	SAMN09781777
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.86
Jumbo phage	No

Genome content
Genome length	36,810 bps
GC content	58.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.91%
Average CDS length	590.03 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174163_2	COG	COG0783	DNA-binding ferritin-like protein (oxidative damage protectant)	NA
UHGV-0174163_2	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-0174163_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0174163_4	UniRef90	UniRef90_A7VTB0	Phage minor capsid protein 2	NA
UHGV-0174163_4	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0174163_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0174163_4	COG	COG2369	NA	NA
UHGV-0174163_4	Structural annotation	PF06152	NA	NA
UHGV-0174163_5	PHROG	phrog_533	portal protein	head and packaging
UHGV-0174163_5	UniRef90	UniRef90_UPI001898C571	phage portal protein	NA
UHGV-0174163_5	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0174163_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0174163_5	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0174163_5	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0174163_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174163_6	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0174163_6	UniRef90	UniRef90_A0A847YTD2	PBSX family phage terminase large subunit	NA
UHGV-0174163_6	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0174163_6	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0174163_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174163_6	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0174163_8	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0174163_8	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0174163_8	UniRef90	UniRef90_F0SQP3	Phage DNA modification protein	NA
UHGV-0174163_8	eggNOG-mapper	619693.HMPREF6745_2515	NA	NA
UHGV-0174163_8	Structural annotation	PF16092, MF_02210, NF007025, COG3818	NA	NA
UHGV-0174163_9	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0174163_9	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0174163_9	UniRef90	UniRef90_A0A3D3Y046	Chromosome partitioning protein ParB	NA
UHGV-0174163_9	eggNOG-mapper	1035196.HMPREF9998_01728	NA	NA
UHGV-0174163_9	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0174163_9	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0174163_9	COG	COG0863	DNA modification methylase	NA
UHGV-0174163_9	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0174163_10	PHROG	phrog_21498	NA	unknown function
UHGV-0174163_10	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0174163_10	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0174163_10	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0174163_11	eggNOG-mapper	1235802.C823_01567	NA	NA
UHGV-0174163_11	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0174163_15	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0174163_15	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0174163_15	UniRef90	UniRef90_UPI001D0735F7	Lar family restriction alleviation protein	NA
UHGV-0174163_15	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0174163_15	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0174163_15	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0174163_15	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0174163_16	Structural annotation	MF_00839	NA	NA
UHGV-0174163_17	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0174163_17	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0174163_17	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0174163_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0174163_17	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0174163_18	Structural annotation	PF18129, NF000331	NA	NA
UHGV-0174163_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0174163_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174163_19	UniRef90	UniRef90_A0A7C6XX43	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0174163_19	eggNOG-mapper	1129145.H2BD71_9CAUD	magnesium ion binding	NA
UHGV-0174163_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0174163_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0174163_20	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0174163_20	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0174163_20	Structural annotation	PF11417	NA	NA
UHGV-0174163_21	PHROG	phrog_15768	NA	unknown function
UHGV-0174163_21	UniRef90	UniRef90_UPI001959E913	NA	NA
UHGV-0174163_21	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-0174163_21	AcrCatalog	cluster_38323	NA	NA
UHGV-0174163_21	Pfam	PF19808	NA	DUF6291
UHGV-0174163_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0174163_21	Structural annotation	PF19808	NA	NA
UHGV-0174163_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174163_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174163_22	UniRef90	UniRef90_A0A352RPR0	Single-stranded DNA-binding protein	NA
UHGV-0174163_22	eggNOG-mapper	1235797.C816_01960	Single-strand binding protein family	NA
UHGV-0174163_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174163_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174163_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174163_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174163_22	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0174163_23	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174163_23	UniRef90	UniRef90_A0A7K3ZA74	HNH endonuclease	NA
UHGV-0174163_23	eggNOG-mapper	1048339.KB913029_gene4935	PFAM HNH endonuclease	NA
UHGV-0174163_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0174163_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174163_24	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0174163_24	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0174163_24	Structural annotation	PF05772	NA	NA
UHGV-0174163_25	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174163_25	UniRef90	UniRef90_A0A6N2RMY2	ERF superfamily protein	NA
UHGV-0174163_25	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-0174163_25	Pfam	PF04404	ERF superfamily	ERF
UHGV-0174163_25	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0174163_26	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0174163_26	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0174163_29	PHROG	phrog_9570	tail length tape measure protein	tail
UHGV-0174163_29	UniRef90	UniRef90_UPI00156E9C9F	phage tail tip lysozyme	NA
UHGV-0174163_29	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0174163_31	UniRef90	UniRef90_A0A2Z4GU98	Ribonuclease inhibitor	NA
UHGV-0174163_31	eggNOG-mapper	563031.HMPREF0666_01114	NA	NA
UHGV-0174163_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174163_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174163_34	UniRef90	UniRef90_A0A1Q6RKG1	HTH cro/C1-type domain-containing protein	NA
UHGV-0174163_34	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0174163_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174163_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174163_34	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174163_36	eggNOG-mapper	218140.BPSY_1280	NA	NA
UHGV-0174163_37	eggNOG-mapper	431943.CKL_2012	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0174163_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174163_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174163_37	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0174163_38	KOfam	K14059	int; integrase	NA
UHGV-0174163_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0174163_38	UniRef90	UniRef90_UPI000F051A1D	tyrosine-type recombinase/integrase	NA
UHGV-0174163_38	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0174163_38	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0174163_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174163_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174163_38	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0174163_39	UniRef90	UniRef90_A0A096AZ46	HTH cro/C1-type domain-containing protein	NA
UHGV-0174163_39	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174163_39	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0174163_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174163_39	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0174163_40	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174163_40	UniRef90	UniRef90_A0A316L5V7	AP2/ERF domain-containing protein	NA
UHGV-0174163_40	eggNOG-mapper	879308.HMPREF9130_0377	NA	NA
UHGV-0174163_40	AcrCatalog	cluster_10901	NA	NA
UHGV-0174163_40	Structural annotation	PF00847, PF18337	NA	NA
UHGV-0174163_43	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0174163_43	PHROG	phrog_435	endolysin	lysis
UHGV-0174163_43	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174163_43	eggNOG-mapper	1232428.CAVO010000021_gene787	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174163_43	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0174163_43	Pfam	PF05036	SPOR domain	SPOR
UHGV-0174163_43	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174163_43	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0174163_44	PHROG	phrog_881	holin	lysis
UHGV-0174163_44	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0174163_44	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0174163_44	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0174163_44	Structural annotation	PF16938	NA	NA
UHGV-0174163_45	UniRef90	UniRef90_A0A3A9IW95	Branched-chain amino acid ABC transporter permease	NA
UHGV-0174163_45	eggNOG-mapper	742740.HMPREF9474_03521	NA	NA
UHGV-0174163_46	PHROG	phrog_18110	NA	unknown function
UHGV-0174163_46	UniRef90	UniRef90_A0A3A6ECU0	Prophage_tail domain-containing protein	NA
UHGV-0174163_46	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0174163_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0174163_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0174163_46	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0174163_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174163_47	UniRef90	UniRef90_R6N293	Putative phage tail component domain protein	NA
UHGV-0174163_47	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0174163_48	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0174163_48	UniRef90	UniRef90_A0A3A6E908	TMP_3 domain-containing protein	NA
UHGV-0174163_48	eggNOG-mapper	1216932.CM240_0683	tape measure	NA
UHGV-0174163_48	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0174163_48	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0174163_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0174163_48	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0174163_49	PHROG	phrog_706	NA	unknown function
UHGV-0174163_49	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0174163_49	Structural annotation	PF06854	NA	NA
UHGV-0174163_50	Structural annotation	PF10666	NA	NA
UHGV-0174163_51	PHROG	phrog_820	major tail protein	tail
UHGV-0174163_51	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0174163_51	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0174163_51	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0174163_51	COG	COG5492	NA	NA
UHGV-0174163_51	Structural annotation	PF06199, PF18316, TIGR02126, COG5437	NA	NA
UHGV-0174163_52	Structural annotation	PF12691	NA	NA
UHGV-0174163_53	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0174163_53	UniRef90	UniRef90_UPI001E51130F	minor capsid protein	NA
UHGV-0174163_53	eggNOG-mapper	52979.O03933_9CAUD	Minor capsid protein	NA
UHGV-0174163_53	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0174163_53	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0174163_54	UniRef90	UniRef90_UPI0015E09E7E	putative minor capsid protein	NA
UHGV-0174163_54	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0174163_55	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0174163_55	eggNOG-mapper	1161901.I1TLE4_9CAUD	NA	NA
UHGV-0174163_56	PHROG	phrog_422	major head protein	head and packaging
UHGV-0174163_56	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0174163_56	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0174163_56	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0174163_58	PHROG	phrog_13126	beta-1,4-glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0174163_58	UniRef90	UniRef90_A0A1C7FRY3	Glycosyl transferase family 2	NA
UHGV-0174163_58	eggNOG-mapper	742738.HMPREF9460_00302	transferase activity, transferring glycosyl groups	NA
UHGV-0174163_58	Pfam	PF14559	Tetratricopeptide repeat	TPR_19
UHGV-0174163_58	Pfam	PF07719	Tetratricopeptide repeat	TPR_2
UHGV-0174163_58	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0174163_58	Structural annotation	PF18768, PF13641, MF_00994, MF_00316, TIGR04195, COG0457, COG0463	NA	NA
UHGV-0174163_59	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0174163_59	PHROG	phrog_819	tail protein	tail
UHGV-0174163_59	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0174163_59	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen