UHGV-0174164

Genome information

Genome length 39,880 bps

CDS count 46

Completeness 60.90% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174164
vOTU ID	vOTU-028738
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585525
BioSample	SAMN09781789
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.7
Jumbo phage	No

Genome content
Genome length	39,880 bps
GC content	37.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.73%
Average CDS length	788.67 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174164_1	PHROG	phrog_2152	NA	unknown function
UHGV-0174164_1	UniRef90	UniRef90_UPI0015711B45	NA	NA
UHGV-0174164_1	eggNOG-mapper	742733.HMPREF9469_05079	NA	NA
UHGV-0174164_1	Pfam	PF19880	NA	DUF6353
UHGV-0174164_1	Structural annotation	PF19880	NA	NA
UHGV-0174164_3	PHROG	phrog_2152	NA	unknown function
UHGV-0174164_3	UniRef90	UniRef90_UPI00156F7DE9	NA	NA
UHGV-0174164_3	eggNOG-mapper	742740.HMPREF9474_02318	NA	NA
UHGV-0174164_3	Pfam	PF19880	NA	DUF6353
UHGV-0174164_3	Structural annotation	PF19880	NA	NA
UHGV-0174164_6	PHROG	phrog_2152	NA	unknown function
UHGV-0174164_6	UniRef90	UniRef90_UPI001D02393E	NA	NA
UHGV-0174164_6	Pfam	PF19880	NA	DUF6353
UHGV-0174164_8	PHROG	phrog_17256	NA	unknown function
UHGV-0174164_8	eggNOG-mapper	428125.CLOLEP_01353	NA	NA
UHGV-0174164_10	Structural annotation	PF06865, MF_01537, NF007875, COG3123	NA	NA
UHGV-0174164_11	UniRef90	UniRef90_A0A3P3R2T1	Beta-carotene 15,15'-monooxygenase	NA
UHGV-0174164_11	eggNOG-mapper	411470.RUMGNA_01356	NA	NA
UHGV-0174164_11	Structural annotation	NF041796	NA	NA
UHGV-0174164_12	PHROG	phrog_15866	NA	unknown function
UHGV-0174164_16	PHROG	phrog_26488	NA	unknown function
UHGV-0174164_17	PHROG	phrog_11237	NA	unknown function
UHGV-0174164_17	eggNOG-mapper	742740.HMPREF9474_02326	NA	NA
UHGV-0174164_18	PHROG	phrog_10675	NA	unknown function
UHGV-0174164_18	UniRef90	UniRef90_UPI00156FAE60	NA	NA
UHGV-0174164_18	eggNOG-mapper	411460.RUMTOR_02456	COG NOG23522 non supervised orthologous group	NA
UHGV-0174164_18	Pfam	PF20020	NA	DUF6431
UHGV-0174164_18	COG	COG3464	Transposase	NA
UHGV-0174164_18	Structural annotation	PF20020, TIGR03831, COG3436	NA	NA
UHGV-0174164_19	KOfam	K14059	int; integrase	NA
UHGV-0174164_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0174164_19	UniRef90	UniRef90_UPI0015705AB3	tyrosine-type recombinase/integrase	NA
UHGV-0174164_19	eggNOG-mapper	411460.RUMTOR_02457	NA	NA
UHGV-0174164_19	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0174164_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174164_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174164_19	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0174164_20	UniRef90	UniRef90_UPI001E4D989F	CTP synthase	NA
UHGV-0174164_20	eggNOG-mapper	411490.ANACAC_00599	NA	NA
UHGV-0174164_21	PHROG	phrog_1129	holin	lysis
UHGV-0174164_21	UniRef90	UniRef90_UPI0018AA468C	phage holin family protein	NA
UHGV-0174164_21	eggNOG-mapper	478749.BRYFOR_08506	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0174164_21	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0174164_21	Structural annotation	PF06946	NA	NA
UHGV-0174164_22	PHROG	phrog_6616	tail protein	tail
UHGV-0174164_22	UniRef90	UniRef90_UPI0018AA2BE3	tail fiber domain-containing protein	NA
UHGV-0174164_22	eggNOG-mapper	1211844.CBLM010000023_gene978	cellulase activity	NA
UHGV-0174164_22	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0174164_22	Structural annotation	PF13884, PF01957	NA	NA
UHGV-0174164_23	PHROG	phrog_26795	NA	unknown function
UHGV-0174164_23	UniRef90	UniRef90_UPI001C38532D	phage tail protein	NA
UHGV-0174164_23	eggNOG-mapper	478749.BRYFOR_08511	NA	NA
UHGV-0174164_23	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0174164_24	KOfam	K24498	SORL1; sortilin-related receptor	NA
UHGV-0174164_24	UniRef90	UniRef90_UPI00189FEAEA	fibronectin type III domain-containing protein	NA
UHGV-0174164_24	eggNOG-mapper	478749.BRYFOR_08512	Fibronectin type 3 domain	NA
UHGV-0174164_24	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0174164_24	Structural annotation	PF06995, PF02010, PF18001, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-0174164_25	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0174164_25	UniRef90	UniRef90_UPI0018AB58C5	tape measure protein	NA
UHGV-0174164_25	eggNOG-mapper	478749.BRYFOR_08513	Peptidoglycan-binding domain 1 protein	NA
UHGV-0174164_25	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0174164_25	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0174164_25	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0174164_25	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0174164_26	UniRef90	UniRef90_UPI00156D56EF	HK97 gp10 family phage protein	NA
UHGV-0174164_26	eggNOG-mapper	742740.HMPREF9474_02263	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0174164_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0174164_26	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0174164_27	KOfam	K07273	acm; lysozyme	NA
UHGV-0174164_27	PHROG	phrog_6745	endolysin	lysis
UHGV-0174164_27	UniRef90	UniRef90_UPI00189DCC7B	SH3 domain-containing protein	NA
UHGV-0174164_27	eggNOG-mapper	1121115.AXVN01000006_gene2170	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0174164_27	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0174164_27	Pfam	PF05257	CHAP domain	CHAP
UHGV-0174164_27	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0174164_27	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0174164_27	Structural annotation	PF01183, PF18342, PF14603, NF040678, TIGR04303, COG3757, COG3807	NA	NA
UHGV-0174164_28	PHROG	phrog_4338	NA	unknown function
UHGV-0174164_28	eggNOG-mapper	428125.CLOLEP_01417	NA	NA
UHGV-0174164_29	PHROG	phrog_4282	NA	unknown function
UHGV-0174164_29	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-0174164_30	PHROG	phrog_2645	major tail protein	tail
UHGV-0174164_30	UniRef90	UniRef90_A0A2U8UI58	Major tail protein	NA
UHGV-0174164_30	eggNOG-mapper	742740.HMPREF9474_02267	NA	NA
UHGV-0174164_30	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0174164_31	eggNOG-mapper	478749.BRYFOR_08519	NA	NA
UHGV-0174164_31	Structural annotation	PF20765	NA	NA
UHGV-0174164_32	PHROG	phrog_4270	NA	unknown function
UHGV-0174164_32	eggNOG-mapper	478749.BRYFOR_08520	NA	NA
UHGV-0174164_32	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0174164_34	KOfam	K06904	NA	NA
UHGV-0174164_34	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0174164_34	UniRef90	UniRef90_UPI001570C78B	caudovirus prohead protease	NA
UHGV-0174164_34	eggNOG-mapper	478749.BRYFOR_08521	NA	NA
UHGV-0174164_34	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0174164_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174164_35	UniRef90	UniRef90_UPI00156E2D03	phage portal protein	NA
UHGV-0174164_35	eggNOG-mapper	411460.RUMTOR_01348	Phage portal protein	NA
UHGV-0174164_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174164_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174164_36	PHROG	phrog_134	NA	unknown function
UHGV-0174164_36	UniRef90	UniRef90_A0A3R6AA38	XkdX family protein	NA
UHGV-0174164_36	eggNOG-mapper	1298920.KI911353_gene4834	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0174164_36	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0174164_36	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0174164_38	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0174164_38	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0174164_38	UniRef90	UniRef90_UPI00189FCCEF	reverse transcriptase domain-containing protein	NA
UHGV-0174164_38	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0174164_38	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0174164_38	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0174164_38	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0174164_38	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0174164_39	PHROG	phrog_19280	NA	unknown function
UHGV-0174164_39	UniRef90	UniRef90_UPI00189E6E88	NA	NA
UHGV-0174164_39	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0174164_39	Pfam	PF19789	NA	DUF6273
UHGV-0174164_39	Structural annotation	PF19789	NA	NA
UHGV-0174164_40	eggNOG-mapper	1304866.K413DRAFT_4770	PFAM Formylglycine-generating sulfatase enzyme	NA
UHGV-0174164_40	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-0174164_41	PHROG	phrog_19695	NA	unknown function
UHGV-0174164_41	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0174164_41	Structural annotation	PF19714	NA	NA
UHGV-0174164_42	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174164_42	UniRef90	UniRef90_UPI00189EC794	terminase large subunit	NA
UHGV-0174164_42	eggNOG-mapper	742740.HMPREF9474_02272	Phage Terminase	NA
UHGV-0174164_42	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174164_42	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174164_42	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174164_43	PHROG	phrog_7021	NA	unknown function
UHGV-0174164_43	eggNOG-mapper	428125.CLOLEP_01408	NA	NA
UHGV-0174164_44	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0174164_44	UniRef90	UniRef90_A0A373C8E1	Structural protein	NA
UHGV-0174164_44	eggNOG-mapper	665950.HMPREF1025_01991	NA	NA
UHGV-0174164_45	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174164_45	eggNOG-mapper	411460.RUMTOR_01352	NA	NA
UHGV-0174164_46	PHROG	phrog_4259	NA	unknown function
UHGV-0174164_46	eggNOG-mapper	742733.HMPREF9469_05037	NA	NA