UHGV-0174166

Genome information

Genome length 40,006 bps

CDS count 66

Completeness 98.38% (high-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174166
vOTU ID	vOTU-070068
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585524
BioSample	SAMN09781789
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.38% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.93
Jumbo phage	No

Genome content
Genome length	40,006 bps
GC content	51.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	88.93%
Average CDS length	544.09 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174166_1	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0174166_5	eggNOG-mapper	1384065.JAGS01000001_gene3265	sequence-specific DNA binding	NA
UHGV-0174166_5	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0174166_5	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0174166_8	PHROG	phrog_15303	NA	unknown function
UHGV-0174166_9	PHROG	phrog_1863	NA	unknown function
UHGV-0174166_9	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0174166_10	KOfam	K07273	acm; lysozyme	NA
UHGV-0174166_10	PHROG	phrog_291	endolysin	lysis
UHGV-0174166_10	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0174166_10	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0174166_10	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0174166_10	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0174166_10	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0174166_11	KOfam	K01051	E3.1.1.11; pectinesterase [EC:3.1.1.11]	NA
UHGV-0174166_11	eggNOG-mapper	1410630.JNKP01000001_gene1971	NA	NA
UHGV-0174166_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0174166_13	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0174166_13	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0174166_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0174166_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0174166_13	COG	COG4926	Phage-related protein	NA
UHGV-0174166_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0174166_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174166_14	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0174166_14	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-0174166_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0174166_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0174166_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0174166_15	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0174166_15	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-0174166_15	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0174166_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0174166_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0174166_15	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0174166_15	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0174166_18	PHROG	phrog_88	major tail protein	tail
UHGV-0174166_18	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0174166_18	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0174166_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0174166_18	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0174166_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174166_19	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0174166_19	eggNOG-mapper	33035.JPJF01000039_gene277	NA	NA
UHGV-0174166_19	Structural annotation	TIGR01725	NA	NA
UHGV-0174166_20	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0174166_20	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0174166_21	PHROG	phrog_19734	NA	unknown function
UHGV-0174166_21	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0174166_21	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0174166_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174166_22	PHROG	phrog_749	NA	unknown function
UHGV-0174166_22	UniRef90	UniRef90_A0A371IJS1	Phage gp6-like head-tail connector protein	NA
UHGV-0174166_22	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0174166_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174166_23	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0174166_23	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0174166_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174166_23	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0174166_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174166_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0174166_23	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174166_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0174166_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0174166_24	UniRef90	UniRef90_A0A0H5SII2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0174166_24	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0174166_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0174166_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0174166_24	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0174166_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174166_25	UniRef90	UniRef90_A0A2A7AM75	Phage portal protein	NA
UHGV-0174166_25	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0174166_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174166_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0174166_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0174166_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174166_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174166_26	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0174166_26	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0174166_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174166_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174166_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174166_27	PHROG	phrog_13845	NA	unknown function
UHGV-0174166_27	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0174166_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0174166_28	PHROG	phrog_13999	NA	unknown function
UHGV-0174166_28	eggNOG-mapper	1391428.V5KT07_9CAUD	NA	NA
UHGV-0174166_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174166_29	UniRef90	UniRef90_A0A2A7B6I3	HNH domain-containing protein	NA
UHGV-0174166_29	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0174166_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174166_34	Structural annotation	PF14354	NA	NA
UHGV-0174166_35	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0174166_35	UniRef90	UniRef90_A0A1C6JAV8	Transcriptional activator, adenine-specific DNA methyltransferase	NA
UHGV-0174166_35	eggNOG-mapper	1121423.JONT01000060_gene932	Belongs to the MT-A70-like family	NA
UHGV-0174166_35	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0174166_35	Pfam	PF05063	MT-A70	MT-A70
UHGV-0174166_35	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0174166_36	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0174166_36	UniRef90	UniRef90_UPI00137A72F9	MT-A70 family methyltransferase	NA
UHGV-0174166_36	eggNOG-mapper	1378168.N510_01248	Belongs to the MT-A70-like family	NA
UHGV-0174166_36	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0174166_36	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0174166_37	Structural annotation	PF04545	NA	NA
UHGV-0174166_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0174166_38	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0174166_38	UniRef90	UniRef90_A0A2A7AMC5	ParB domain-containing protein	NA
UHGV-0174166_38	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0174166_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0174166_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0174166_38	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0174166_39	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-0174166_40	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0174166_40	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0174166_40	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0174166_40	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0174166_40	Pfam	PF13614	AAA domain	AAA_31
UHGV-0174166_40	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0174166_40	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0174166_41	PHROG	phrog_6969	NA	unknown function
UHGV-0174166_41	eggNOG-mapper	748224.HMPREF9436_00735	NA	NA
UHGV-0174166_41	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0174166_41	Pfam	PF19481	NA	DUF6017
UHGV-0174166_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0174166_41	Structural annotation	PF19481, PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0174166_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174166_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174166_42	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0174166_42	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0174166_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174166_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174166_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174166_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174166_42	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0174166_43	PHROG	phrog_7566	NA	unknown function
UHGV-0174166_43	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0174166_46	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0174166_46	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0174166_46	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0174166_47	PHROG	phrog_14970	NA	unknown function
UHGV-0174166_47	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0174166_47	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0174166_55	UniRef90	UniRef90_UPI000BEF0F65	helix-turn-helix transcriptional regulator	NA
UHGV-0174166_55	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0174166_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174166_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174166_56	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0174166_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174166_56	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174166_56	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0174166_57	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0174166_61	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0174166_61	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0174166_61	UniRef90	UniRef90_UPI001EE95DBE	3'-5' exoribonuclease	NA
UHGV-0174166_61	eggNOG-mapper	665956.HMPREF1032_02791	NA	NA
UHGV-0174166_61	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0174166_61	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0174166_61	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0174166_61	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0174166_61	Structural annotation	PF13361, PF00533, MF_00157, NF008746, COG2925	NA	NA
UHGV-0174166_64	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0174166_64	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0174166_64	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0174166_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174166_64	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174166_64	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174166_65	KOfam	K14059	int; integrase	NA
UHGV-0174166_65	PHROG	phrog_1	integrase	integration and excision
UHGV-0174166_65	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0174166_65	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0174166_65	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174166_65	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174166_65	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0174166_66	eggNOG-mapper	445972.ANACOL_01884	NA	NA