UHGV-0174231

Genome information

Genome length 33,521 bps

CDS count 49

Completeness 87.59% (medium-quality)

geNomad score 0.9635

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174231
vOTU ID	vOTU-018355
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_564451
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9635
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.32
Jumbo phage	No

Genome content
Genome length	33,521 bps
GC content	43.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.00%
Average CDS length	620.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174231_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0174231_2	UniRef90	UniRef90_A0A354K455	Prophage_tailD1 domain-containing protein	NA
UHGV-0174231_2	eggNOG-mapper	1443125.Z962_p0068	Prophage endopeptidase tail	NA
UHGV-0174231_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0174231_2	COG	COG4926	Phage-related protein	NA
UHGV-0174231_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0174231_4	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0174231_4	PHROG	phrog_5218	NA	unknown function
UHGV-0174231_4	UniRef90	UniRef90_A0A1G5CPJ5	Phage-related minor tail protein	NA
UHGV-0174231_4	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0174231_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0174231_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0174231_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0174231_5	Structural annotation	PF11836	NA	NA
UHGV-0174231_6	PHROG	phrog_88	major tail protein	tail
UHGV-0174231_6	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0174231_6	COG	COG5492	NA	NA
UHGV-0174231_6	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0174231_7	Structural annotation	TIGR01725	NA	NA
UHGV-0174231_8	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0174231_9	PHROG	phrog_19734	NA	unknown function
UHGV-0174231_9	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0174231_9	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0174231_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174231_10	PHROG	phrog_749	NA	unknown function
UHGV-0174231_10	UniRef90	UniRef90_A0A396SIZ8	Phage gp6-like head-tail connector protein	NA
UHGV-0174231_10	eggNOG-mapper	86416.Clopa_0342	NA	NA
UHGV-0174231_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174231_11	UniRef90	UniRef90_A0A7X5E289	Phage major capsid protein	NA
UHGV-0174231_11	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-0174231_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174231_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174231_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0174231_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174231_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0174231_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0174231_12	UniRef90	UniRef90_A0A0G3WFI3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0174231_12	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0174231_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0174231_12	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0174231_12	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0174231_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174231_13	UniRef90	UniRef90_A0A1G5CMU4	Phage portal protein, HK97 family	NA
UHGV-0174231_13	eggNOG-mapper	665956.HMPREF1032_00118	Phage portal protein, HK97 family	NA
UHGV-0174231_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174231_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0174231_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174231_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174231_14	UniRef90	UniRef90_A0A318XNK0	Phage terminase large subunit-like protein	NA
UHGV-0174231_14	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0174231_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0174231_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174231_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174231_14	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174231_15	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0174231_15	UniRef90	UniRef90_UPI000C06AD39	P27 family phage terminase small subunit	NA
UHGV-0174231_15	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-0174231_15	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0174231_15	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0174231_17	PHROG	phrog_824	NA	unknown function
UHGV-0174231_17	UniRef90	UniRef90_R7GUQ9	VRR-NUC domain-containing protein	NA
UHGV-0174231_17	eggNOG-mapper	1291050.JAGE01000001_gene480	VRR_NUC	NA
UHGV-0174231_17	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0174231_17	Structural annotation	PF08774	NA	NA
UHGV-0174231_18	Structural annotation	PF13613	NA	NA
UHGV-0174231_19	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0174231_19	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0174231_19	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0174231_24	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0174231_25	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0174231_25	PHROG	phrog_5696	NA	unknown function
UHGV-0174231_25	UniRef90	UniRef90_A0A1C5WE14	Type I restriction-modification system methyltransferase subunit	NA
UHGV-0174231_25	eggNOG-mapper	948106.AWZT01000012_gene1459	N-6 DNA Methylase	NA
UHGV-0174231_25	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0174231_25	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0174231_25	Structural annotation	COG0286	NA	NA
UHGV-0174231_26	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0174231_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0174231_26	UniRef90	UniRef90_UPI001DC26F47	tyrosine-type recombinase/integrase	NA
UHGV-0174231_26	eggNOG-mapper	796940.HMPREF9628_00159	Belongs to the 'phage' integrase family	NA
UHGV-0174231_26	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0174231_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174231_26	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0174231_26	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0174231_29	Structural annotation	PF10372	NA	NA
UHGV-0174231_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174231_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174231_31	UniRef90	UniRef90_R5VRL4	Single-stranded DNA-binding protein	NA
UHGV-0174231_31	eggNOG-mapper	411473.RUMCAL_03263	Single-stranded DNA-binding protein	NA
UHGV-0174231_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174231_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174231_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174231_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174231_35	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0174231_35	UniRef90	UniRef90_A0A2S7ZGS0	Replisome organizer	NA
UHGV-0174231_35	eggNOG-mapper	1111134.HMPREF1253_0491	Phage replisome organizer N-terminal domain protein	NA
UHGV-0174231_35	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0174231_35	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0174231_35	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG0640	NA	NA
UHGV-0174231_36	Structural annotation	PF10743	NA	NA
UHGV-0174231_37	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0174231_37	UniRef90	UniRef90_A0A352TI38	Bro-N domain-containing protein	NA
UHGV-0174231_37	eggNOG-mapper	1462526.BN990_03845	BRO family, N-terminal domain	NA
UHGV-0174231_37	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0174231_37	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0174231_37	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0174231_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174231_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174231_41	UniRef90	UniRef90_R7FCD2	DNA-binding helix-turn-helix protein	NA
UHGV-0174231_41	eggNOG-mapper	697281.Mahau_0099	PFAM Helix-turn-helix	NA
UHGV-0174231_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174231_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174231_41	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174231_42	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0174231_42	UniRef90	UniRef90_H1BHQ1	ORF6N domain-containing protein	NA
UHGV-0174231_42	eggNOG-mapper	1347368.HG964404_gene4981	ORF6N domain	NA
UHGV-0174231_42	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0174231_42	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0174231_42	Structural annotation	PF10543, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0174231_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0174231_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174231_45	UniRef90	UniRef90_A0A3C0IJA8	HTH cro/C1-type domain-containing protein	NA
UHGV-0174231_45	eggNOG-mapper	202752.JL53_07085	Transcriptional regulator	NA
UHGV-0174231_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174231_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174231_45	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174231_46	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0174231_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174231_46	UniRef90	UniRef90_R7F9Y3	Transcriptional regulator	NA
UHGV-0174231_46	eggNOG-mapper	235909.GK0494	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174231_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174231_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174231_46	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0174231_47	KOfam	K11641	natR; two-component system, LytTR family, response regulator NatR	NA
UHGV-0174231_47	PHROG	phrog_8810	NA	unknown function
UHGV-0174231_47	UniRef90	UniRef90_A0A352TI42	Stage 0 sporulation protein A homolog	NA
UHGV-0174231_47	eggNOG-mapper	356829.BITS_0510	LytTr DNA-binding domain	NA
UHGV-0174231_47	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0174231_47	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0174231_47	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0174231_48	PHROG	phrog_23726	NA	unknown function
UHGV-0174231_48	eggNOG-mapper	428125.CLOLEP_01549	cell wall binding repeat	NA
UHGV-0174231_48	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA