UHGV-0174247

Genome information

Genome length 43,780 bps

CDS count 64

Completeness 74.91% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174247
vOTU ID	vOTU-022478
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_571408
BioSample	SAMN06348140
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.59
Jumbo phage	No

Genome content
Genome length	43,780 bps
GC content	40.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	83.68%
Average CDS length	574.41 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174247_7	UniRef90	UniRef90_A0A3R6A796	Molecular chaperone DnaJ	NA
UHGV-0174247_7	eggNOG-mapper	500632.CLONEX_02609	DnaJ molecular chaperone homology domain	NA
UHGV-0174247_7	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0174247_7	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0174247_7	Structural annotation	PF18847	NA	NA
UHGV-0174247_8	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0174247_8	UniRef90	UniRef90_A0A173UEE2	Predicted transcriptional regulator	NA
UHGV-0174247_8	eggNOG-mapper	1235790.C805_00736	Transcriptional regulator	NA
UHGV-0174247_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0174247_8	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0174247_8	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0174247_10	eggNOG-mapper	397290.C810_01353	NA	NA
UHGV-0174247_10	Structural annotation	PF16677	NA	NA
UHGV-0174247_12	Structural annotation	PF04606	NA	NA
UHGV-0174247_15	PHROG	phrog_9607	NA	unknown function
UHGV-0174247_15	eggNOG-mapper	272626.lin1257	NA	NA
UHGV-0174247_15	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0174247_17	eggNOG-mapper	1282664.H354_06631	NA	NA
UHGV-0174247_18	Pfam	PF10122	NA	Mu-like_Com
UHGV-0174247_18	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0174247_19	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0174247_19	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0174247_19	UniRef90	UniRef90_A0A352SH31	RNA-splicing ligase RtcB	NA
UHGV-0174247_19	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0174247_19	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0174247_19	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0174247_19	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0174247_20	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0174247_20	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0174247_20	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0174247_20	COG	COG5410	NA	NA
UHGV-0174247_20	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0174247_21	PHROG	phrog_11237	NA	unknown function
UHGV-0174247_21	eggNOG-mapper	476272.RUMHYD_01941	NA	NA
UHGV-0174247_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0174247_22	UniRef90	UniRef90_UPI00156EA9F5	phage portal protein	NA
UHGV-0174247_22	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0174247_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0174247_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0174247_23	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-0174247_24	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0174247_24	UniRef90	UniRef90_UPI001D096CC5	NA	NA
UHGV-0174247_24	eggNOG-mapper	1203606.HMPREF1526_00325	NA	NA
UHGV-0174247_24	Pfam	PF17236	NA	DUF5309
UHGV-0174247_24	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0174247_24	Structural annotation	PF17236, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0174247_25	UniRef90	UniRef90_UPI0018A0DAC6	phage head-tail connector protein	NA
UHGV-0174247_25	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0174247_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0174247_27	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0174247_27	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0174247_28	PHROG	phrog_1233	NA	unknown function
UHGV-0174247_28	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0174247_28	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0174247_29	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0174247_29	AcrCatalog	cluster_24841	NA	NA
UHGV-0174247_29	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0174247_30	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174247_30	UniRef90	UniRef90_Q4ZBR0	ORF019	NA
UHGV-0174247_30	eggNOG-mapper	1159488.SEQMU2_01825	NA	NA
UHGV-0174247_31	Structural annotation	PF05657	NA	NA
UHGV-0174247_32	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0174247_32	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0174247_33	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0174247_35	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0174247_35	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0174247_35	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0174247_35	COG	COG1511	NA	NA
UHGV-0174247_36	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0174247_36	Structural annotation	PF02368, NF041740	NA	NA
UHGV-0174247_37	Structural annotation	PF16777, NF010256, COG4877	NA	NA
UHGV-0174247_41	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0174247_41	UniRef90	UniRef90_A0A6N2TXK2	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0174247_41	eggNOG-mapper	397290.C810_01445	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0174247_41	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0174247_41	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0174247_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0174247_41	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0174247_42	eggNOG-mapper	1304866.K413DRAFT_4838	NA	NA
UHGV-0174247_43	PHROG	phrog_1194	NA	unknown function
UHGV-0174247_43	Pfam	PF20458	NA	DUF6711
UHGV-0174247_43	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0174247_44	PHROG	phrog_18190	NA	unknown function
UHGV-0174247_44	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0174247_44	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0174247_44	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0174247_44	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0174247_45	PHROG	phrog_17196	kinase	other
UHGV-0174247_45	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0174247_45	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0174247_47	eggNOG-mapper	742740.HMPREF9474_04291	NA	NA
UHGV-0174247_48	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0174247_48	Structural annotation	NF040910	NA	NA
UHGV-0174247_49	PHROG	phrog_937	hemolysin	other
UHGV-0174247_50	PHROG	phrog_443	holin	lysis
UHGV-0174247_50	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0174247_50	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0174247_50	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0174247_50	Structural annotation	PF16945	NA	NA
UHGV-0174247_51	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0174247_51	PHROG	phrog_670	endolysin	lysis
UHGV-0174247_51	UniRef90	UniRef90_UPI00192054C9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174247_51	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0174247_51	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0174247_51	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0174247_51	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0174247_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174247_53	UniRef90	UniRef90_A0A1Q9J746	HTH cro/C1-type domain-containing protein	NA
UHGV-0174247_53	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-0174247_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174247_53	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0174247_53	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0174247_54	UniRef90	UniRef90_UPI0011DD7594	helix-turn-helix domain-containing protein	NA
UHGV-0174247_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174247_54	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0174247_55	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0174247_55	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0174247_55	UniRef90	UniRef90_A0A292SST5	AntA domain-containing protein	NA
UHGV-0174247_55	eggNOG-mapper	397290.C810_01343	AntA/AntB antirepressor	NA
UHGV-0174247_55	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0174247_55	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0174247_55	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0174247_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174247_58	PHROG	phrog_26861	NA	unknown function
UHGV-0174247_58	UniRef90	UniRef90_A0A3R6HE90	Single-stranded DNA-binding protein	NA
UHGV-0174247_58	eggNOG-mapper	1235802.C823_04125	NA	NA
UHGV-0174247_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174247_58	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0174247_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174247_58	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0174247_60	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0174247_60	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174247_60	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0174247_60	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0174247_60	Pfam	PF13476	AAA domain	AAA_23
UHGV-0174247_60	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0174247_60	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0174247_62	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA