UHGV-0174249

Genome information

vOTU vOTU-019736

Genome length 43,488 bps

CDS count 75

Completeness 75.55% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174249
vOTU ID	vOTU-019736
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_571413
BioSample	SAMN06348140
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.46
Jumbo phage	No

Genome content
Genome length	43,488 bps
GC content	39.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	85.49%
Average CDS length	498.56 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174249_2	PHROG	phrog_25456	NA	unknown function
UHGV-0174249_3	KOfam	K06940	NA	NA
UHGV-0174249_3	PHROG	phrog_32498	NA	unknown function
UHGV-0174249_3	UniRef90	UniRef90_A0A3R6ASD4	YkgJ family cysteine cluster protein	NA
UHGV-0174249_3	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0174249_3	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0174249_3	Structural annotation	PF03692	NA	NA
UHGV-0174249_4	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174249_4	UniRef90	UniRef90_C0CR26	HNHc domain-containing protein	NA
UHGV-0174249_4	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0174249_4	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0174249_4	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0174249_4	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0174249_4	Structural annotation	PF13392, PF07463	NA	NA
UHGV-0174249_5	eggNOG-mapper	658655.HMPREF0988_00883	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0174249_5	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0174249_6	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0174249_6	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0174249_6	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0174249_6	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-0174249_6	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0174249_6	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0174249_8	PHROG	phrog_19106	NA	unknown function
UHGV-0174249_8	UniRef90	UniRef90_A0A412EKN4	GIY-YIG nuclease family protein	NA
UHGV-0174249_8	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0174249_8	Structural annotation	TIGR01453	NA	NA
UHGV-0174249_9	PHROG	phrog_11769	NA	unknown function
UHGV-0174249_9	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0174249_9	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0174249_9	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0174249_9	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0174249_9	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0174249_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0174249_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0174249_10	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0174249_10	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0174249_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0174249_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0174249_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0174249_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0174249_13	PHROG	phrog_21026	NA	unknown function
UHGV-0174249_15	PHROG	phrog_8684	NA	unknown function
UHGV-0174249_15	UniRef90	UniRef90_A0A3R7C0X3	YopX domain-containing protein	NA
UHGV-0174249_15	eggNOG-mapper	1235794.C811_01545	NA	NA
UHGV-0174249_15	Pfam	PF09643	YopX protein	YopX
UHGV-0174249_15	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0174249_15	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0174249_16	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-0174249_17	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0174249_17	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-0174249_17	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0174249_17	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0174249_17	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0174249_17	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0174249_17	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0174249_18	PHROG	phrog_20593	NA	unknown function
UHGV-0174249_20	PHROG	phrog_874	NA	unknown function
UHGV-0174249_20	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0174249_20	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0174249_24	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0174249_24	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0174249_24	AcrCatalog	cluster_47493	NA	NA
UHGV-0174249_24	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0174249_25	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0174249_25	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0174249_25	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0174249_26	KOfam	K14059	int; integrase	NA
UHGV-0174249_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0174249_26	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0174249_26	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0174249_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174249_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174249_26	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0174249_28	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0174249_29	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0174249_30	PHROG	phrog_16490	NA	unknown function
UHGV-0174249_30	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0174249_31	PHROG	phrog_20016	NA	unknown function
UHGV-0174249_31	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0174249_31	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0174249_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174249_32	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0174249_33	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0174249_33	Structural annotation	PF13058	NA	NA
UHGV-0174249_37	Structural annotation	PF10694, MF_00403_B, NF007348, COG5569	NA	NA
UHGV-0174249_38	eggNOG-mapper	397290.C810_01348	NA	NA
UHGV-0174249_40	PHROG	phrog_31631	NA	unknown function
UHGV-0174249_45	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0174249_46	UniRef90	UniRef90_A0A396PR63	Nucleotide pyrophosphohydrolase	NA
UHGV-0174249_47	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0174249_49	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0174249_52	PHROG	phrog_2316	NA	unknown function
UHGV-0174249_52	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0174249_52	eggNOG-mapper	1157490.EL26_01915	NA	NA
UHGV-0174249_52	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0174249_53	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0174249_53	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0174249_53	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0174249_53	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0174249_53	COG	COG5410	NA	NA
UHGV-0174249_53	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0174249_54	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174249_54	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0174249_54	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0174249_54	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0174249_54	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0174249_55	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0174249_56	PHROG	phrog_64	portal protein	head and packaging
UHGV-0174249_56	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-0174249_56	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0174249_56	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0174249_56	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0174249_58	PHROG	phrog_544	major head protein	head and packaging
UHGV-0174249_58	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-0174249_58	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-0174249_58	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0174249_58	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0174249_59	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0174249_59	Structural annotation	PF21169	NA	NA
UHGV-0174249_60	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0174249_61	PHROG	phrog_4105	NA	unknown function
UHGV-0174249_61	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0174249_62	PHROG	phrog_443	holin	lysis
UHGV-0174249_62	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0174249_62	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0174249_62	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0174249_62	Structural annotation	PF16945	NA	NA
UHGV-0174249_63	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0174249_64	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0174249_64	AcrCatalog	cluster_24841	NA	NA
UHGV-0174249_65	Structural annotation	PF05657	NA	NA
UHGV-0174249_66	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0174249_66	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0174249_69	PHROG	phrog_14030	NA	unknown function
UHGV-0174249_69	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0174249_69	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0174249_69	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0174249_70	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0174249_70	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-0174249_70	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0174249_71	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0174249_71	UniRef90	UniRef90_A0A1G5JI33	Ig-like domain (Group 2) (Fragment)	NA
UHGV-0174249_71	eggNOG-mapper	1280681.AUJZ01000002_gene1435	Bacterial Ig-like domain 2	NA
UHGV-0174249_71	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0174249_71	Structural annotation	PF02368, NF041740	NA	NA
UHGV-0174249_72	PHROG	phrog_806	NA	unknown function
UHGV-0174249_72	UniRef90	UniRef90_UPI001D08E833	NA	NA
UHGV-0174249_72	eggNOG-mapper	1235802.C823_04880	NA	NA
UHGV-0174249_72	Pfam	PF11611	NA	DUF4352
UHGV-0174249_72	Structural annotation	PF11611, PF13828, MF_00791, NF003967, COG2967	NA	NA
UHGV-0174249_73	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0174249_73	UniRef90	UniRef90_UPI0009D7969F	transporter	NA
UHGV-0174249_73	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0174249_73	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0174249_73	COG	COG3617	Prophage antirepressor	NA
UHGV-0174249_73	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0174249_74	PHROG	phrog_1194	NA	unknown function
UHGV-0174249_74	Pfam	PF20458	NA	DUF6711
UHGV-0174249_74	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0174249_75	PHROG	phrog_18190	NA	unknown function
UHGV-0174249_75	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0174249_75	eggNOG-mapper	397290.C810_01435	NA	NA