UHGV-0174295

Genome information

Genome length 35,558 bps

CDS count 55

Completeness 99.31% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174295
vOTU ID	vOTU-010910
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590053
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.31% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.75
Jumbo phage	No

Genome content
Genome length	35,558 bps
GC content	45.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.40%
Average CDS length	615.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174295_1	PHROG	phrog_13890	NA	unknown function
UHGV-0174295_2	KOfam	K14059	int; integrase	NA
UHGV-0174295_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0174295_2	UniRef90	UniRef90_A0A1Q6MGA4	Site-specific integrase	NA
UHGV-0174295_2	eggNOG-mapper	742741.HMPREF9475_00397	Phage integrase family	NA
UHGV-0174295_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174295_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174295_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0174295_3	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0174295_3	PHROG	phrog_15286	NA	unknown function
UHGV-0174295_3	UniRef90	UniRef90_A0A173XJ80	Bro-N domain-containing protein	NA
UHGV-0174295_3	eggNOG-mapper	1232452.BAIB02000007_gene1654	NA	NA
UHGV-0174295_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0174295_3	COG	COG3617	Prophage antirepressor	NA
UHGV-0174295_3	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-0174295_4	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0174295_4	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0174295_4	UniRef90	UniRef90_A0A1Q6MG32	HicB family protein	NA
UHGV-0174295_4	eggNOG-mapper	397287.C807_02051	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0174295_4	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0174295_4	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0174295_4	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0174295_5	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0174295_5	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0174295_5	UniRef90	UniRef90_A0A3R6X664	Addiction module toxin, HicA family	NA
UHGV-0174295_5	eggNOG-mapper	1408311.JNJM01000002_gene1308	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0174295_5	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0174295_5	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0174295_5	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0174295_7	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0174295_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0174295_7	UniRef90	UniRef90_R5VT81	LexA repressor	NA
UHGV-0174295_7	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0174295_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174295_7	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0174295_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0174295_7	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0174295_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0174295_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174295_8	UniRef90	UniRef90_R5WNF4	HTH cro/C1-type domain-containing protein	NA
UHGV-0174295_8	eggNOG-mapper	279010.BL00668	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174295_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174295_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174295_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0174295_12	KOfam	K03744	lemA; LemA protein	NA
UHGV-0174295_12	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0174295_12	UniRef90	UniRef90_A0A1Q6MG17	LemA family protein	NA
UHGV-0174295_12	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0174295_12	Pfam	PF04011	LemA family	LemA
UHGV-0174295_12	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0174295_12	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0174295_13	PHROG	phrog_3886	NA	unknown function
UHGV-0174295_13	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA
UHGV-0174295_14	PHROG	phrog_6058	NA	unknown function
UHGV-0174295_14	UniRef90	UniRef90_A0A1I2TJF0	Helix-turn-helix domain-containing protein	NA
UHGV-0174295_14	eggNOG-mapper	742823.HMPREF9465_00186	NA	NA
UHGV-0174295_14	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0174295_16	PHROG	phrog_20014	NA	unknown function
UHGV-0174295_16	eggNOG-mapper	411470.RUMGNA_02042	NA	NA
UHGV-0174295_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174295_17	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-0174295_17	Structural annotation	PF01446	NA	NA
UHGV-0174295_18	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0174295_18	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0174295_18	UniRef90	UniRef90_A0A1Q6MG39	RNase H type-1 domain-containing protein	NA
UHGV-0174295_18	eggNOG-mapper	641147.HMPREF9021_01060	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0174295_18	Pfam	PF00075	RNase H	RNase_H
UHGV-0174295_18	COG	COG0328	Ribonuclease HI	NA
UHGV-0174295_19	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0174295_20	PHROG	phrog_8470	NA	unknown function
UHGV-0174295_20	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0174295_20	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-0174295_20	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0174295_20	Structural annotation	PF14284	NA	NA
UHGV-0174295_21	PHROG	phrog_15077	NA	unknown function
UHGV-0174295_21	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0174295_21	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0174295_21	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0174295_22	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0174295_24	eggNOG-mapper	411468.CLOSCI_00572	NA	NA
UHGV-0174295_25	eggNOG-mapper	411468.CLOSCI_00555	NA	NA
UHGV-0174295_26	PHROG	phrog_7566	NA	unknown function
UHGV-0174295_26	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0174295_27	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0174295_27	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0174295_27	eggNOG-mapper	706433.HMPREF9430_01279	NA	NA
UHGV-0174295_27	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0174295_27	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0174295_28	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0174295_28	UniRef90	UniRef90_A0A3D5LSK2	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0174295_28	eggNOG-mapper	1095750.HMPREF9970_1671	NA	NA
UHGV-0174295_28	Pfam	PF14359	NA	DUF4406
UHGV-0174295_28	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0174295_28	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0174295_29	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0174295_31	PHROG	phrog_11237	NA	unknown function
UHGV-0174295_31	eggNOG-mapper	1235798.C817_04578	NA	NA
UHGV-0174295_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174295_32	UniRef90	UniRef90_A0A1Q6MG73	HNH domain-containing protein	NA
UHGV-0174295_32	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0174295_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0174295_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174295_33	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0174295_33	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-0174295_33	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0174295_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0174295_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0174295_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174295_34	UniRef90	UniRef90_A0A1Q6MG31	Terminase	NA
UHGV-0174295_34	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0174295_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0174295_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174295_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174295_34	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174295_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174295_35	UniRef90	UniRef90_A0A1Q6MFZ4	Phage portal protein	NA
UHGV-0174295_35	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0174295_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174295_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0174295_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0174295_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174295_36	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0174295_36	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0174295_36	UniRef90	UniRef90_A0A1Q6MG19	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0174295_36	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0174295_36	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0174295_36	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0174295_36	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0174295_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174295_37	UniRef90	UniRef90_A0A412EM78	Phage major capsid protein	NA
UHGV-0174295_37	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0174295_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174295_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174295_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0174295_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174295_38	PHROG	phrog_749	NA	unknown function
UHGV-0174295_38	UniRef90	UniRef90_W0FM58	Gp6 protein	NA
UHGV-0174295_38	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0174295_39	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0174295_39	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0174295_39	eggNOG-mapper	1384484.AEQU_1178	NA	NA
UHGV-0174295_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174295_40	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0174295_41	PHROG	phrog_5509	neck protein	connector
UHGV-0174295_41	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-0174295_41	eggNOG-mapper	1347392.CCEZ01000045_gene11	NA	NA
UHGV-0174295_41	Structural annotation	TIGR01725	NA	NA
UHGV-0174295_42	UniRef90	UniRef90_A0A374TPV8	Phage tail protein	NA
UHGV-0174295_42	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-0174295_42	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0174295_45	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0174295_45	UniRef90	UniRef90_A0A1Q6MG21	PhageMin_Tail domain-containing protein	NA
UHGV-0174295_45	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0174295_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0174295_45	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0174295_45	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0174295_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174295_46	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0174295_46	eggNOG-mapper	411468.CLOSCI_00277	NA	NA
UHGV-0174295_46	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0174295_47	PHROG	phrog_538	minor tail protein	tail
UHGV-0174295_47	UniRef90	UniRef90_W0FH81	Phage head fiber protein	NA
UHGV-0174295_47	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0174295_47	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0174295_47	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0174295_48	PHROG	phrog_9994	NA	unknown function
UHGV-0174295_48	UniRef90	UniRef90_A0A087E4D0	Phage-related putative tail protein	NA
UHGV-0174295_48	eggNOG-mapper	658655.HMPREF0988_02549	NA	NA
UHGV-0174295_48	Structural annotation	PF20747	NA	NA
UHGV-0174295_49	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-0174295_50	Structural annotation	PF07233, MF_00791, NF003967, COG2967	NA	NA
UHGV-0174295_51	PHROG	phrog_199	holin	lysis
UHGV-0174295_51	UniRef90	UniRef90_A0A173W8Y4	Phage-related holin (Lysis protein)	NA
UHGV-0174295_51	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0174295_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0174295_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0174295_51	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0174295_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0174295_52	KOfam	K07273	acm; lysozyme	NA
UHGV-0174295_52	PHROG	phrog_291	endolysin	lysis
UHGV-0174295_52	UniRef90	UniRef90_A0A173W541	Lysozyme M1	NA
UHGV-0174295_52	eggNOG-mapper	411474.COPEUT_02639	hydrolase, family 25	NA
UHGV-0174295_52	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0174295_52	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0174295_52	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0174295_52	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0174295_53	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0174295_55	UniRef90	UniRef90_A0A8I0AQA2	Helix-turn-helix transcriptional regulator	NA
UHGV-0174295_55	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0174295_55	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0174295_55	Structural annotation	PF13443, NF000090, COG3655	NA	NA