UHGV-0174303

Genome information

Genome length 38,662 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174303
vOTU ID	vOTU-062929
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588702
BioSample	SAMN09781746
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.67
Jumbo phage	No

Genome content
Genome length	38,662 bps
GC content	47.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.68%
Average CDS length	668.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174303_1	KOfam	K14059	int; integrase	NA
UHGV-0174303_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0174303_1	UniRef90	UniRef90_UPI00191722F2	site-specific integrase	NA
UHGV-0174303_1	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0174303_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0174303_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174303_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174303_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0174303_2	PHROG	phrog_15412	NA	unknown function
UHGV-0174303_2	UniRef90	UniRef90_UPI00156E50E6	heavy metal-binding domain-containing protein	NA
UHGV-0174303_2	eggNOG-mapper	537013.CLOSTMETH_03242	Putative heavy-metal-binding	NA
UHGV-0174303_2	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-0174303_2	COG	COG0393	NA	NA
UHGV-0174303_3	eggNOG-mapper	762051.LKI_01990	NA	NA
UHGV-0174303_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0174303_4	UniRef90	UniRef90_A0A1C6J701	Helix-turn-helix	NA
UHGV-0174303_4	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0174303_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174303_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0174303_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0174303_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174303_6	UniRef90	UniRef90_A0A1C6ITJ1	Antitoxin PezA	NA
UHGV-0174303_6	eggNOG-mapper	610130.Closa_0705	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174303_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174303_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174303_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174303_8	UniRef90	UniRef90_R6BIK1	HTH cro/C1-type domain-containing protein	NA
UHGV-0174303_8	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0174303_8	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0174303_11	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0174303_11	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0174303_13	PHROG	phrog_3777	NA	unknown function
UHGV-0174303_13	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0174303_13	Structural annotation	PF18441	NA	NA
UHGV-0174303_14	Structural annotation	PF19128	NA	NA
UHGV-0174303_16	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174303_16	UniRef90	UniRef90_UPI001C0120DF	YqaJ viral recombinase family protein	NA
UHGV-0174303_16	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-0174303_16	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0174303_16	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0174303_16	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0174303_16	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0174303_17	PHROG	phrog_674	NA	unknown function
UHGV-0174303_17	UniRef90	UniRef90_UPI001C0153C8	NA	NA
UHGV-0174303_17	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0174303_17	Pfam	PF07083	NA	DUF1351
UHGV-0174303_17	Structural annotation	PF07083	NA	NA
UHGV-0174303_18	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0174303_18	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174303_18	UniRef90	UniRef90_UPI001C026F6F	recombinase RecT	NA
UHGV-0174303_18	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0174303_18	Pfam	PF03837	RecT family	RecT
UHGV-0174303_18	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0174303_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0174303_18	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0174303_19	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174303_19	UniRef90	UniRef90_UPI001C030B8A	NA	NA
UHGV-0174303_19	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0174303_19	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0174303_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0174303_19	Structural annotation	PF14297	NA	NA
UHGV-0174303_20	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0174303_20	UniRef90	UniRef90_UPI00156FBCEE	ORF6C domain-containing protein	NA
UHGV-0174303_20	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0174303_20	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0174303_20	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0174303_20	COG	COG3617	Prophage antirepressor	NA
UHGV-0174303_20	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0174303_21	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0174303_21	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0174303_21	UniRef90	UniRef90_UPI00148B1899	DNA adenine methylase	NA
UHGV-0174303_21	eggNOG-mapper	610130.Closa_0735	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0174303_21	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0174303_21	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0174303_21	COG	COG0338	DNA-adenine methylase	NA
UHGV-0174303_21	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0174303_22	PHROG	phrog_9300	NA	unknown function
UHGV-0174303_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174303_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174303_23	UniRef90	UniRef90_UPI001C026824	single-stranded DNA-binding protein	NA
UHGV-0174303_23	eggNOG-mapper	658088.HMPREF0987_02000	Single-strand binding protein family	NA
UHGV-0174303_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174303_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174303_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174303_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174303_23	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0174303_25	PHROG	phrog_8684	NA	unknown function
UHGV-0174303_25	UniRef90	UniRef90_A0A1C6E0T1	YopX protein	NA
UHGV-0174303_25	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0174303_25	Pfam	PF09643	YopX protein	YopX
UHGV-0174303_25	Pfam	PF04448	NA	DUF551
UHGV-0174303_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0174303_27	PHROG	phrog_15077	NA	unknown function
UHGV-0174303_27	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0174303_29	PHROG	phrog_6568	NA	unknown function
UHGV-0174303_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174303_30	UniRef90	UniRef90_A0A1C5VKJ4	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0174303_30	eggNOG-mapper	97139.C824_05976	sigma factor activity	NA
UHGV-0174303_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0174303_30	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0174303_31	PHROG	phrog_2412	NA	unknown function
UHGV-0174303_31	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0174303_31	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0174303_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174303_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0174303_32	UniRef90	UniRef90_UPI00156FDA8C	terminase family protein	NA
UHGV-0174303_32	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-0174303_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0174303_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174303_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0174303_33	UniRef90	UniRef90_UPI00156ECCAD	phage capsid protein	NA
UHGV-0174303_33	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0174303_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0174303_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0174303_34	UniRef90	UniRef90_UPI001917634A	minor capsid protein	NA
UHGV-0174303_34	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0174303_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0174303_34	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-0174303_34	COG	COG2369	NA	NA
UHGV-0174303_35	Structural annotation	PF14425	NA	NA
UHGV-0174303_36	PHROG	phrog_21498	NA	unknown function
UHGV-0174303_36	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0174303_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0174303_36	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0174303_37	PHROG	phrog_918	NA	unknown function
UHGV-0174303_37	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0174303_37	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0174303_37	Pfam	PF19791	NA	DUF6275
UHGV-0174303_37	Structural annotation	PF19791	NA	NA
UHGV-0174303_38	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0174303_38	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0174303_38	eggNOG-mapper	521003.COLINT_02327	NA	NA
UHGV-0174303_39	PHROG	phrog_13199	NA	unknown function
UHGV-0174303_39	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0174303_40	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0174303_40	UniRef90	UniRef90_K1ST28	Phage minor structural protein (Fragment)	NA
UHGV-0174303_40	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0174303_40	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0174303_40	Structural annotation	PF06810	NA	NA
UHGV-0174303_41	PHROG	phrog_422	major head protein	head and packaging
UHGV-0174303_41	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0174303_41	eggNOG-mapper	1235794.C811_01371	NA	NA
UHGV-0174303_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0174303_42	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0174303_43	PHROG	phrog_3366	NA	unknown function
UHGV-0174303_43	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0174303_43	Pfam	PF20536	NA	DUF6751
UHGV-0174303_43	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0174303_44	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0174303_44	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0174303_44	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0174303_45	PHROG	phrog_3266	tail completion	connector
UHGV-0174303_45	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0174303_45	Structural annotation	PF12691	NA	NA
UHGV-0174303_46	PHROG	phrog_3099	NA	unknown function
UHGV-0174303_46	eggNOG-mapper	1235792.C808_05373	NA	NA
UHGV-0174303_46	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0174303_47	PHROG	phrog_706	NA	unknown function
UHGV-0174303_47	UniRef90	UniRef90_A0A1C5QVP1	Bacteriophage Gp15 protein	NA
UHGV-0174303_47	eggNOG-mapper	1235792.C808_05375	COG NOG24969 non supervised orthologous group	NA
UHGV-0174303_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0174303_47	Structural annotation	PF06854	NA	NA
UHGV-0174303_48	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0174303_48	UniRef90	UniRef90_A0A1C5QW36	Phage-related protein	NA
UHGV-0174303_48	eggNOG-mapper	693746.OBV_25080	Phage-related minor tail protein	NA
UHGV-0174303_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0174303_48	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0174303_48	COG	COG5283	Phage-related tail protein	NA
UHGV-0174303_48	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280, COG3853	NA	NA
UHGV-0174303_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174303_49	UniRef90	UniRef90_A0A1C5QVY7	Phage-related protein	NA
UHGV-0174303_49	eggNOG-mapper	1235799.C818_04232	phage tail	NA
UHGV-0174303_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0174303_49	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-0174303_50	PHROG	phrog_3558	tail protein	tail
UHGV-0174303_50	UniRef90	UniRef90_A0A1C5QW63	Phage minor structural protein, N-terminal region	NA
UHGV-0174303_50	eggNOG-mapper	1120933.ATUY01000002_gene164	Prophage endopeptidase tail	NA
UHGV-0174303_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0174303_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0174303_50	COG	COG4926	Phage-related protein	NA
UHGV-0174303_50	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0174303_51	PHROG	phrog_38190	NA	unknown function
UHGV-0174303_51	UniRef90	UniRef90_UPI001960CF5B	head fiber protein	NA
UHGV-0174303_51	eggNOG-mapper	742733.HMPREF9469_01803	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0174303_51	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0174303_52	UniRef90	UniRef90_B6WRR9	Phage Tail Collar Domain protein (Fragment)	NA
UHGV-0174303_52	eggNOG-mapper	1408428.JNJP01000079_gene3365	Phage tail-collar fibre protein	NA
UHGV-0174303_52	COG	COG4675	Phage tail collar domain	NA
UHGV-0174303_54	PHROG	phrog_199	holin	lysis
UHGV-0174303_54	UniRef90	UniRef90_A0A3D4RB03	Holin	NA
UHGV-0174303_54	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0174303_54	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0174303_54	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0174303_54	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0174303_54	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0174303_55	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0174303_55	PHROG	phrog_1794	amidase	lysis
UHGV-0174303_55	UniRef90	UniRef90_A0A1C6J4E5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174303_55	eggNOG-mapper	397290.C810_00440	Ami_2	NA
UHGV-0174303_55	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0174303_55	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174303_55	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA