UHGV-0174362

Genome information

Genome length 43,077 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174362
vOTU ID	vOTU-046516
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582514
BioSample	SAMN09781780
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.11
Jumbo phage	No

Genome content
Genome length	43,077 bps
GC content	58.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	95.43%
Average CDS length	724.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174362_1	eggNOG-mapper	471870.BACINT_04494	NA	NA
UHGV-0174362_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0174362_2	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-0174362_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0174362_3	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0174362_3	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0174362_4	Structural annotation	PF18962, NF011773	NA	NA
UHGV-0174362_5	PHROG	phrog_13543	NA	unknown function
UHGV-0174362_5	eggNOG-mapper	1232449.BAHV02000016_gene1805	NA	NA
UHGV-0174362_6	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-0174362_6	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0174362_8	eggNOG-mapper	537007.BLAHAN_05255	NA	NA
UHGV-0174362_9	PHROG	phrog_12105	NA	unknown function
UHGV-0174362_9	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0174362_10	PHROG	phrog_15239	NA	unknown function
UHGV-0174362_11	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0174362_11	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0174362_11	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0174362_11	Pfam	PF13252	NA	DUF4043
UHGV-0174362_11	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0174362_11	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0174362_12	PHROG	phrog_13908	NA	unknown function
UHGV-0174362_12	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0174362_13	PHROG	phrog_156	portal protein	head and packaging
UHGV-0174362_13	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0174362_13	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0174362_14	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0174362_14	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0174362_14	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0174362_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174362_15	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0174362_15	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0174362_15	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0174362_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0174362_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174362_15	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0174362_16	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0174362_16	Structural annotation	PF16677	NA	NA
UHGV-0174362_17	UniRef90	UniRef90_A0A8G1TBS8	Conjugal transfer protein	NA
UHGV-0174362_17	eggNOG-mapper	610130.Closa_0274	Cysteine-rich KTR	NA
UHGV-0174362_17	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0174362_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174362_18	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0174362_18	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0174362_23	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174362_23	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0174362_23	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-0174362_23	Pfam	PF06356	NA	DUF1064
UHGV-0174362_23	Structural annotation	PF06356	NA	NA
UHGV-0174362_26	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0174362_26	UniRef90	UniRef90_UPI001D09006D	Lar family restriction alleviation protein	NA
UHGV-0174362_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0174362_26	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0174362_26	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0174362_26	COG	COG1405	Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB	NA
UHGV-0174362_26	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0174362_27	PHROG	phrog_31029	NA	unknown function
UHGV-0174362_28	PHROG	phrog_38832	NA	unknown function
UHGV-0174362_28	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0174362_28	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0174362_29	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0174362_29	UniRef90	UniRef90_A0A413FXK8	NA	NA
UHGV-0174362_29	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0174362_29	Pfam	PF14359	NA	DUF4406
UHGV-0174362_29	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0174362_29	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-0174362_30	UniRef90	UniRef90_UPI001C10265C	NA	NA
UHGV-0174362_30	Pfam	PF04448	NA	DUF551
UHGV-0174362_30	Structural annotation	NF041588	NA	NA
UHGV-0174362_31	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0174362_31	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0174362_31	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0174362_31	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0174362_31	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0174362_31	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0174362_31	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0174362_31	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0174362_32	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0174362_32	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0174362_32	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0174362_32	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0174362_32	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0174362_32	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0174362_32	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0174362_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0174362_32	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0174362_35	Structural annotation	PF05082	NA	NA
UHGV-0174362_36	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0174362_37	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0174362_37	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0174362_39	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0174362_42	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0174362_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174362_42	UniRef90	UniRef90_E2ZIF0	DNA-binding helix-turn-helix protein	NA
UHGV-0174362_42	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0174362_42	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0174362_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174362_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174362_42	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174362_44	eggNOG-mapper	471855.Shel_04260	dextransucrase activity	NA
UHGV-0174362_44	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0174362_45	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0174362_46	KOfam	K14059	int; integrase	NA
UHGV-0174362_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0174362_46	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0174362_46	eggNOG-mapper	641112.ACOK01000111_gene1860	Phage integrase family	NA
UHGV-0174362_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174362_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174362_46	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0174362_47	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0174362_47	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0174362_50	PHROG	phrog_5783	NA	unknown function
UHGV-0174362_50	UniRef90	UniRef90_A0A7X2P6J8	NYN domain-containing protein	NA
UHGV-0174362_50	eggNOG-mapper	742742.HMPREF9452_00448	NYN domain	NA
UHGV-0174362_50	Pfam	PF01936	NYN domain	NYN
UHGV-0174362_50	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0174362_50	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0174362_51	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0174362_51	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0174362_51	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0174362_51	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-0174362_52	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0174362_52	PHROG	phrog_1794	amidase	lysis
UHGV-0174362_52	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174362_52	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0174362_52	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0174362_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174362_52	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0174362_53	PHROG	phrog_13256	NA	unknown function
UHGV-0174362_53	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0174362_55	PHROG	phrog_937	hemolysin	other
UHGV-0174362_55	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0174362_56	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0174362_56	eggNOG-mapper	610130.Closa_0587	Tyrosine phosphatase family	NA
UHGV-0174362_56	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0174362_56	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-0174362_56	Structural annotation	PF13350, TIGR01244, COG2365	NA	NA
UHGV-0174362_57	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0174362_57	UniRef90	UniRef90_R6LGA5	SGNH_hydro domain-containing protein	NA
UHGV-0174362_57	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0174362_57	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA