UHGV-0174366

Genome information

vOTU vOTU-001984

Genome length 39,346 bps

CDS count 64

Completeness 100.00% (complete)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174366
vOTU ID	vOTU-001984
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582519
BioSample	SAMN09781780
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.44
Jumbo phage	No

Genome content
Genome length	39,346 bps
GC content	54.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.79%
Average CDS length	555.98 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174366_2	PHROG	phrog_199	holin	lysis
UHGV-0174366_2	UniRef90	UniRef90_A0A3C0NPD5	Holin	NA
UHGV-0174366_2	eggNOG-mapper	742738.HMPREF9460_00365	Bacteriophage holin family	NA
UHGV-0174366_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0174366_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0174366_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0174366_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0174366_3	PHROG	phrog_14030	NA	unknown function
UHGV-0174366_3	UniRef90	UniRef90_A0A316NTC6	PG_binding_1 domain-containing protein	NA
UHGV-0174366_3	eggNOG-mapper	1121115.AXVN01000051_gene809	NLP P60 protein	NA
UHGV-0174366_3	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0174366_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0174366_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0174366_3	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-0174366_5	PHROG	phrog_30034	NA	unknown function
UHGV-0174366_5	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-0174366_5	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0174366_5	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0174366_5	Structural annotation	PF14600	NA	NA
UHGV-0174366_8	Structural annotation	PF21253, PF07210, NF038128, TIGR03000, COG2512	NA	NA
UHGV-0174366_9	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0174366_9	PHROG	phrog_7158	NA	unknown function
UHGV-0174366_9	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0174366_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0174366_10	PHROG	phrog_32744	NA	unknown function
UHGV-0174366_10	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0174366_10	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0174366_11	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0174366_12	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0174366_12	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0174366_12	COG	COG1511	NA	NA
UHGV-0174366_12	Structural annotation	PF20155	NA	NA
UHGV-0174366_13	PHROG	phrog_18646	NA	unknown function
UHGV-0174366_13	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0174366_14	PHROG	phrog_885	major tail protein	tail
UHGV-0174366_14	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0174366_14	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0174366_14	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0174366_15	Structural annotation	PF11367	NA	NA
UHGV-0174366_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0174366_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0174366_18	PHROG	phrog_544	major head protein	head and packaging
UHGV-0174366_18	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0174366_18	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0174366_18	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0174366_18	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0174366_19	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0174366_19	Structural annotation	PF06810	NA	NA
UHGV-0174366_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174366_20	UniRef90	UniRef90_UPI0015C5E40B	HK97 gp10 family phage protein	NA
UHGV-0174366_20	eggNOG-mapper	764299.STRIC_1434	NA	NA
UHGV-0174366_20	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0174366_21	PHROG	phrog_35328	NA	unknown function
UHGV-0174366_22	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0174366_22	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0174366_22	eggNOG-mapper	1235792.C808_05364	Phage minor capsid protein 2	NA
UHGV-0174366_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0174366_22	COG	COG2369	NA	NA
UHGV-0174366_22	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-0174366_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0174366_23	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0174366_23	eggNOG-mapper	411468.CLOSCI_00292	Phage portal protein, SPP1 family	NA
UHGV-0174366_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0174366_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0174366_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174366_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0174366_24	UniRef90	UniRef90_A0A373MY72	PBSX family phage terminase large subunit	NA
UHGV-0174366_24	eggNOG-mapper	397290.C810_05187	Phage terminase large subunit	NA
UHGV-0174366_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0174366_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0174366_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174366_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0174366_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0174366_25	UniRef90	UniRef90_A0A1M5ZJM4	Transposase	NA
UHGV-0174366_25	eggNOG-mapper	1487921.DP68_08850	transposase activity	NA
UHGV-0174366_25	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0174366_26	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0174366_26	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0174366_26	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-0174366_26	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0174366_26	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0174366_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0174366_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0174366_26	COG	COG0863	DNA modification methylase	NA
UHGV-0174366_26	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0174366_27	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0174366_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174366_29	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0174366_29	Structural annotation	PF21578	NA	NA
UHGV-0174366_31	UniRef90	UniRef90_A0A847E3M6	Ribbon-helix-helix protein, CopG family	NA
UHGV-0174366_31	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0174366_31	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0174366_33	PHROG	phrog_3136	NA	unknown function
UHGV-0174366_33	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0174366_33	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0174366_33	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0174366_33	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0174366_37	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0174366_37	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0174366_37	UniRef90	UniRef90_A0A3D5I936	Methyltransferase	NA
UHGV-0174366_37	eggNOG-mapper	1120971.AUCA01000037_gene2882	Belongs to the MT-A70-like family	NA
UHGV-0174366_37	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0174366_37	Pfam	PF05063	MT-A70	MT-A70
UHGV-0174366_37	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0174366_37	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0174366_38	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0174366_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0174366_38	UniRef90	UniRef90_UPI0009E1B041	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0174366_38	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0174366_38	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0174366_38	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0174366_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0174366_38	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0174366_39	PHROG	phrog_24518	NA	unknown function
UHGV-0174366_39	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0174366_40	PHROG	phrog_824	NA	unknown function
UHGV-0174366_40	UniRef90	UniRef90_A0A6N8GXS9	VRR-NUC domain-containing protein	NA
UHGV-0174366_40	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0174366_40	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0174366_47	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0174366_47	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0174366_52	PHROG	phrog_4709	NA	unknown function
UHGV-0174366_52	eggNOG-mapper	663278.Ethha_1834	NA	NA
UHGV-0174366_52	AcrCatalog	cluster_3300	NA	NA
UHGV-0174366_53	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0174366_53	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0174366_53	UniRef90	UniRef90_A0A350VVA2	XRE family transcriptional regulator	NA
UHGV-0174366_53	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0174366_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174366_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174366_53	Structural annotation	PF12844, MF_02017, NF007257, COG1396	NA	NA
UHGV-0174366_55	UniRef90	UniRef90_A0A7C6FQM2	SAP domain-containing protein	NA
UHGV-0174366_55	eggNOG-mapper	1408323.JQKK01000005_gene152	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0174366_55	Pfam	PF02037	SAP domain	SAP
UHGV-0174366_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174366_56	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174366_56	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174366_57	KOfam	K14059	int; integrase	NA
UHGV-0174366_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0174366_57	UniRef90	UniRef90_UPI001874116E	tyrosine-type recombinase/integrase	NA
UHGV-0174366_57	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0174366_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174366_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174366_57	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0174366_58	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0174366_59	Structural annotation	PF12510	NA	NA
UHGV-0174366_60	PHROG	phrog_20016	NA	unknown function
UHGV-0174366_60	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0174366_60	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0174366_60	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174366_61	PHROG	phrog_16490	NA	unknown function
UHGV-0174366_61	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0174366_62	PHROG	phrog_22984	NA	unknown function
UHGV-0174366_63	PHROG	phrog_21718	NA	unknown function
UHGV-0174366_63	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0174366_64	PHROG	phrog_3754	NA	unknown function
UHGV-0174366_64	eggNOG-mapper	476272.RUMHYD_01764	NA	NA