UHGV-0174383

Genome information

Genome length 32,979 bps

CDS count 52

Completeness 96.50% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174383
vOTU ID	vOTU-077247
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585541
BioSample	SAMN09781789
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.37
Jumbo phage	No

Genome content
Genome length	32,979 bps
GC content	60.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.40%
Average CDS length	595.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174383_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174383_1	UniRef90	UniRef90_UPI001958184D	HNH endonuclease	NA
UHGV-0174383_1	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0174383_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0174383_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174383_2	UniRef90	UniRef90_UPI001D014F8E	cysteine-rich KTR domain-containing protein	NA
UHGV-0174383_2	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0174383_2	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0174383_2	Structural annotation	PF14205	NA	NA
UHGV-0174383_3	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174383_3	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0174383_3	Structural annotation	PF01446	NA	NA
UHGV-0174383_5	PHROG	phrog_3136	NA	unknown function
UHGV-0174383_5	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0174383_5	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0174383_5	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0174383_5	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0174383_10	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0174383_10	PHROG	phrog_27290	NA	unknown function
UHGV-0174383_10	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-0174383_10	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0174383_10	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0174383_10	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0174383_10	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0174383_11	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0174383_11	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0174383_11	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0174383_11	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0174383_11	Pfam	PF13614	AAA domain	AAA_31
UHGV-0174383_11	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0174383_11	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0174383_13	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0174383_13	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0174383_13	UniRef90	UniRef90_A0A1Y3RP11	DNA helicase	NA
UHGV-0174383_13	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0174383_13	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0174383_13	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0174383_13	COG	COG0305	Replicative DNA helicase	NA
UHGV-0174383_13	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0174383_14	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174383_14	UniRef90	UniRef90_UPI001F170B82	helix-turn-helix domain-containing protein	NA
UHGV-0174383_14	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0174383_14	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0174383_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0174383_14	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0174383_16	Structural annotation	PF21327	NA	NA
UHGV-0174383_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174383_18	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0174383_18	UniRef90	UniRef90_G9YL68	DNA-binding helix-turn-helix protein	NA
UHGV-0174383_18	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174383_18	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0174383_18	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0174383_18	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0174383_19	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174383_19	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0174383_19	UniRef90	UniRef90_UPI000F0D19B9	helix-turn-helix domain-containing protein	NA
UHGV-0174383_19	eggNOG-mapper	1226322.HMPREF1545_02518	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174383_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174383_19	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174383_19	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0174383_21	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0174383_21	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0174383_21	UniRef90	UniRef90_UPI001897CA3A	exonuclease	NA
UHGV-0174383_21	eggNOG-mapper	158787.BSCA_1041	Exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0174383_21	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0174383_21	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0174383_21	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0174383_21	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0174383_21	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0174383_21	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0174383_22	UniRef90	UniRef90_A0A1Y4C9D7	HTH cro/C1-type domain-containing protein	NA
UHGV-0174383_22	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174383_22	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0174383_24	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0174383_24	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0174383_25	KOfam	K14059	int; integrase	NA
UHGV-0174383_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0174383_25	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-0174383_25	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0174383_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174383_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174383_25	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0174383_26	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0174383_26	PHROG	phrog_25567	NA	unknown function
UHGV-0174383_26	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0174383_26	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0174383_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174383_26	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0174383_31	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0174383_31	PHROG	phrog_1493	endolysin	lysis
UHGV-0174383_31	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0174383_31	eggNOG-mapper	994573.T472_0212035	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174383_31	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0174383_31	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0174383_31	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174383_31	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0174383_32	PHROG	phrog_881	holin	lysis
UHGV-0174383_32	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0174383_32	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0174383_32	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0174383_32	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0174383_33	PHROG	phrog_4105	NA	unknown function
UHGV-0174383_33	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0174383_33	eggNOG-mapper	742740.HMPREF9474_02252	NA	NA
UHGV-0174383_34	UniRef90	UniRef90_A0A417BX67	Chitin-binding type-3 domain-containing protein	NA
UHGV-0174383_34	Structural annotation	PF10651, PF04862, TIGR04362, COG5513	NA	NA
UHGV-0174383_35	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0174383_35	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0174383_35	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0174383_35	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0174383_35	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0174383_35	COG	COG4926	Phage-related protein	NA
UHGV-0174383_35	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0174383_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174383_36	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0174383_36	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-0174383_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-0174383_36	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0174383_37	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0174383_37	UniRef90	UniRef90_A0A7X8M4B4	Phage tail protein (Fragment)	NA
UHGV-0174383_37	eggNOG-mapper	1121334.KB911068_gene2299	Phage tail tape measure protein, TP901 family	NA
UHGV-0174383_37	COG	COG5283	Phage-related tail protein	NA
UHGV-0174383_37	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0174383_40	PHROG	phrog_88	major tail protein	tail
UHGV-0174383_40	UniRef90	UniRef90_A0A1C6CIL7	Phage major tail protein, phi13 family	NA
UHGV-0174383_40	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0174383_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0174383_40	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0174383_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174383_41	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0174383_41	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0174383_41	Structural annotation	TIGR01725	NA	NA
UHGV-0174383_42	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0174383_42	Structural annotation	PF05657	NA	NA
UHGV-0174383_43	PHROG	phrog_19734	NA	unknown function
UHGV-0174383_43	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0174383_43	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0174383_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174383_44	PHROG	phrog_749	NA	unknown function
UHGV-0174383_44	eggNOG-mapper	1027396.LMOSA_21430	NA	NA
UHGV-0174383_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174383_45	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0174383_45	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0174383_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174383_45	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0174383_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174383_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0174383_45	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174383_46	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0174383_46	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0174383_46	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0174383_46	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0174383_46	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0174383_46	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0174383_46	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0174383_47	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174383_47	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0174383_47	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0174383_47	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174383_47	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0174383_47	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0174383_47	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174383_48	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174383_48	UniRef90	UniRef90_A0A6I7GGF0	Terminase	NA
UHGV-0174383_48	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0174383_48	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0174383_48	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174383_48	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174383_48	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174383_49	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0174383_49	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0174383_49	eggNOG-mapper	1265845.PWEIH_00610	Phage terminase, small subunit	NA
UHGV-0174383_49	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0174383_49	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0174383_50	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0174383_50	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0174383_50	UniRef90	UniRef90_A0A3M1PY88	Site-specific DNA-methyltransferase (Fragment)	NA
UHGV-0174383_50	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0174383_50	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0174383_50	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0174383_50	COG	COG0863	DNA modification methylase	NA
UHGV-0174383_50	Structural annotation	PF12847, TIGR02469	NA	NA
UHGV-0174383_51	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0174383_51	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0174383_51	UniRef90	UniRef90_A0A810PZK9	ParB domain-containing protein	NA
UHGV-0174383_51	eggNOG-mapper	1211035.CD30_13045	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0174383_51	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0174383_51	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0174383_51	COG	COG0863	DNA modification methylase	NA
UHGV-0174383_51	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA