UHGV-0174385

Genome information

Genome length 32,288 bps

CDS count 54

Completeness 84.64% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174385
vOTU ID	vOTU-028754
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585543
BioSample	SAMN09781789
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.17
Jumbo phage	No

Genome content
Genome length	32,288 bps
GC content	59.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.81%
Average CDS length	559.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174385_1	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174385_1	UniRef90	UniRef90_A0A2U1BC10	HK97 family phage portal protein	NA
UHGV-0174385_1	eggNOG-mapper	1501230.ET33_02290	Phage portal protein	NA
UHGV-0174385_1	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174385_1	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0174385_1	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0174385_2	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0174385_2	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0174385_2	UniRef90	UniRef90_UPI00124513AA	Clp protease ClpP	NA
UHGV-0174385_2	eggNOG-mapper	557436.Lreu_1115	Belongs to the peptidase S14 family	NA
UHGV-0174385_2	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0174385_2	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0174385_2	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0174385_3	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174385_3	UniRef90	UniRef90_UPI000B37FFEF	phage major capsid protein	NA
UHGV-0174385_3	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0174385_3	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174385_3	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174385_3	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174385_4	UniRef90	UniRef90_UPI001C018007	head-tail connector protein	NA
UHGV-0174385_4	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-0174385_4	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0174385_4	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0174385_5	PHROG	phrog_25	head closure Hc1	connector
UHGV-0174385_5	UniRef90	UniRef90_UPI001898DBDF	phage head closure protein	NA
UHGV-0174385_5	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0174385_5	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0174385_5	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0174385_5	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174385_6	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0174385_6	Structural annotation	PF05657	NA	NA
UHGV-0174385_7	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0174385_7	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0174385_7	Structural annotation	TIGR01725	NA	NA
UHGV-0174385_8	PHROG	phrog_88	major tail protein	tail
UHGV-0174385_8	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0174385_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0174385_10	PHROG	phrog_23464	NA	unknown function
UHGV-0174385_10	UniRef90	UniRef90_UPI00189782F4	phage tail protein	NA
UHGV-0174385_10	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0174385_10	COG	COG5412	Phage-related protein	NA
UHGV-0174385_10	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0174385_12	PHROG	phrog_32744	NA	unknown function
UHGV-0174385_12	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0174385_12	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0174385_13	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0174385_13	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0174385_14	PHROG	phrog_4105	NA	unknown function
UHGV-0174385_14	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-0174385_15	PHROG	phrog_13256	NA	unknown function
UHGV-0174385_15	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0174385_17	PHROG	phrog_18955	NA	unknown function
UHGV-0174385_17	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0174385_17	eggNOG-mapper	696369.KI912183_gene2044	exopolysaccharide biosynthesis protein	NA
UHGV-0174385_17	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0174385_17	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0174385_17	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0174385_18	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0174385_18	PHROG	phrog_894	endolysin	lysis
UHGV-0174385_18	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0174385_18	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0174385_18	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0174385_18	COG	COG3108	NA	NA
UHGV-0174385_18	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0174385_19	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0174385_22	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174385_24	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0174385_24	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0174385_25	KOfam	K14059	int; integrase	NA
UHGV-0174385_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0174385_25	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0174385_25	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-0174385_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174385_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174385_25	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0174385_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174385_26	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0174385_26	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0174385_28	PHROG	phrog_17982	NA	unknown function
UHGV-0174385_28	UniRef90	UniRef90_UPI001D029452	NA	NA
UHGV-0174385_28	eggNOG-mapper	720554.Clocl_1541	NA	NA
UHGV-0174385_28	Pfam	PF14020	NA	DUF4236
UHGV-0174385_28	Structural annotation	PF14020	NA	NA
UHGV-0174385_30	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174385_30	UniRef90	UniRef90_G4L1F8	Putative Xre family DNA-binding protein	NA
UHGV-0174385_30	eggNOG-mapper	693746.OBV_19770	sequence-specific DNA binding	NA
UHGV-0174385_30	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0174385_30	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174385_30	Structural annotation	PF12844, MF_02017, NF041951, COG1396	NA	NA
UHGV-0174385_31	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0174385_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174385_31	UniRef90	UniRef90_UPI00030EB95F	helix-turn-helix domain-containing protein	NA
UHGV-0174385_31	eggNOG-mapper	1007096.BAGW01000011_gene2356	sequence-specific DNA binding	NA
UHGV-0174385_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174385_31	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174385_31	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0174385_32	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0174385_33	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0174385_33	UniRef90	UniRef90_U2QJH6	DNA-binding helix-turn-helix protein	NA
UHGV-0174385_33	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174385_33	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0174385_33	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0174385_33	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0174385_34	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174385_34	UniRef90	UniRef90_UPI001ADEF5BC	helix-turn-helix domain-containing protein	NA
UHGV-0174385_34	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0174385_34	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0174385_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0174385_34	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0174385_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0174385_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0174385_35	UniRef90	UniRef90_UPI001C0112E5	AAA family ATPase	NA
UHGV-0174385_35	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0174385_35	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0174385_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0174385_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-0174385_35	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0174385_37	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0174385_37	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0174385_37	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0174385_37	eggNOG-mapper	693746.OBV_19850	Anion-transporting ATPase	NA
UHGV-0174385_37	Pfam	PF13614	AAA domain	AAA_31
UHGV-0174385_37	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0174385_37	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0174385_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0174385_38	PHROG	phrog_27290	NA	unknown function
UHGV-0174385_38	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-0174385_38	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0174385_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0174385_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0174385_38	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0174385_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174385_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174385_42	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0174385_42	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0174385_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174385_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174385_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174385_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174385_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0174385_43	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-0174385_43	Pfam	PF04448	NA	DUF551
UHGV-0174385_44	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0174385_44	PHROG	phrog_17284	NA	unknown function
UHGV-0174385_44	UniRef90	UniRef90_A0A1Q6JM75	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0174385_44	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0174385_44	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0174385_44	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0174385_44	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0174385_44	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0174385_46	PHROG	phrog_38832	NA	unknown function
UHGV-0174385_46	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0174385_47	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0174385_47	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174385_47	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0174385_47	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0174385_47	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0174385_47	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174385_47	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0174385_54	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174385_54	eggNOG-mapper	693746.OBV_19950	NA	NA