UHGV-0174421

Genome information

Genome length 24,590 bps

CDS count 28

Completeness 61.28% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174421
vOTU ID	vOTU-028756
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_577385
BioSample	SAMN07501286
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	19
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.23
Jumbo phage	No

Genome content
Genome length	24,590 bps
GC content	52.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	93.68%
Average CDS length	823.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174421_1	PHROG	phrog_854	glucosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0174421_1	UniRef90	UniRef90_A0A7I7FZX7	Bacteriophage protein	NA
UHGV-0174421_1	eggNOG-mapper	432200.K7P7D2_9CAUD	transferase activity	NA
UHGV-0174421_2	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174421_2	UniRef90	UniRef90_K7P7P6	HNHc domain-containing protein	NA
UHGV-0174421_2	eggNOG-mapper	1147145.K7P7P6_9CAUD	HNH endonuclease	NA
UHGV-0174421_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0174421_3	PHROG	phrog_10282	NA	unknown function
UHGV-0174421_3	UniRef90	UniRef90_UPI001C6FFEE1	serine acetyltransferase	NA
UHGV-0174421_3	eggNOG-mapper	1147143.K7P7A6_9CAUD	NA	NA
UHGV-0174421_4	PHROG	phrog_5601	terminase small subunit	head and packaging
UHGV-0174421_4	UniRef90	UniRef90_K7P7C0	Terminase small subunit	NA
UHGV-0174421_4	eggNOG-mapper	10742.Q77WA1_BPHK0	NA	NA
UHGV-0174421_5	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174421_5	UniRef90	UniRef90_K7P849	Terminase large subunit	NA
UHGV-0174421_5	eggNOG-mapper	1147157.K7PJW8_9CAUD	Phage Terminase	NA
UHGV-0174421_5	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0174421_5	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174421_5	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0174421_6	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174421_6	UniRef90	UniRef90_P49859	Portal protein	NA
UHGV-0174421_6	eggNOG-mapper	10742.Q9MCV6_BPHK0	Phage portal protein	NA
UHGV-0174421_6	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174421_6	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0174421_6	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174421_7	KOfam	K06904	NA	NA
UHGV-0174421_7	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0174421_7	UniRef90	UniRef90_P49860	Prohead protease	NA
UHGV-0174421_7	eggNOG-mapper	1147158.K7PKL4_9CAUD	peptidase activity	NA
UHGV-0174421_7	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0174421_7	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0174421_7	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0174421_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174421_8	UniRef90	UniRef90_P49861	Major capsid protein	NA
UHGV-0174421_8	eggNOG-mapper	10742.Q77WA0_BPHK0	peptidase activity	NA
UHGV-0174421_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174421_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174421_8	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174421_9	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0174421_9	UniRef90	UniRef90_K7PGU9	Head-tail connector I	NA
UHGV-0174421_9	eggNOG-mapper	10742.Q77W99_BPHK0	Phage gp6-like head-tail connector protein	NA
UHGV-0174421_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0174421_9	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0174421_10	PHROG	phrog_25	head closure Hc1	connector
UHGV-0174421_10	UniRef90	UniRef90_Q9MCT0	Putative head-tail adaptor	NA
UHGV-0174421_10	eggNOG-mapper	432200.K7P7L2_9CAUD	Phage head-tail joining protein	NA
UHGV-0174421_10	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0174421_10	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0174421_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174421_11	PHROG	phrog_23409	NA	unknown function
UHGV-0174421_11	UniRef90	UniRef90_A0A7T0DT37	HK97 gp10 family phage protein	NA
UHGV-0174421_11	eggNOG-mapper	1147158.K7PH84_9CAUD	exonuclease activity	NA
UHGV-0174421_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0174421_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0174421_11	Structural annotation	TIGR01725	NA	NA
UHGV-0174421_12	PHROG	phrog_347	tail terminator	connector
UHGV-0174421_12	UniRef90	UniRef90_UPI001C6436DF	NA	NA
UHGV-0174421_12	eggNOG-mapper	1147157.K7PM93_9CAUD	NA	NA
UHGV-0174421_12	Pfam	PF11367	NA	DUF3168
UHGV-0174421_12	Structural annotation	PF11367	NA	NA
UHGV-0174421_13	PHROG	phrog_11009	NA	unknown function
UHGV-0174421_13	UniRef90	UniRef90_K7P835	Major tail subunit	NA
UHGV-0174421_13	eggNOG-mapper	1147157.K7PHL2_9CAUD	NA	NA
UHGV-0174421_13	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0174421_13	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0174421_14	PHROG	phrog_14766	tail protein	tail
UHGV-0174421_14	UniRef90	UniRef90_A0A411GER6	Phage tail protein	NA
UHGV-0174421_14	eggNOG-mapper	1147157.K7PKV6_9CAUD	Pfam:Phage_TAC_1	NA
UHGV-0174421_14	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-0174421_14	Structural annotation	PF06222	NA	NA
UHGV-0174421_15	PHROG	phrog_14766	tail protein	tail
UHGV-0174421_15	UniRef90	UniRef90_A0A6S5JNV0	Phage tail protein	NA
UHGV-0174421_15	eggNOG-mapper	1147157.K7PJX0_9CAUD	NA	NA
UHGV-0174421_15	Pfam	PF13227	NA	DUF4035
UHGV-0174421_15	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-0174421_16	PHROG	phrog_8436	NA	unknown function
UHGV-0174421_16	UniRef90	UniRef90_A0A5I0M382	Zinc ribbon domain-containing protein	NA
UHGV-0174421_16	eggNOG-mapper	911008.GLAD_04139	zinc-ribbon domain	NA
UHGV-0174421_17	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0174421_17	UniRef90	UniRef90_UPI000F8164FB	phage tail tape measure protein	NA
UHGV-0174421_17	eggNOG-mapper	911008.GLAD_04140	tape measure protein	NA
UHGV-0174421_17	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0174421_17	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-0174421_17	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0174421_17	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0174421_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0174421_17	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0174421_18	PHROG	phrog_14	minor tail protein	tail
UHGV-0174421_18	UniRef90	UniRef90_A0A7H0MAW3	Phage tail protein	NA
UHGV-0174421_18	eggNOG-mapper	1115515.EV102420_11_00060	Phage minor tail protein	NA
UHGV-0174421_18	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0174421_18	COG	COG4718	Phage tail protein	NA
UHGV-0174421_18	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0174421_19	PHROG	phrog_18	minor tail protein	tail
UHGV-0174421_19	UniRef90	UniRef90_A0A2H9EHC2	Phage minor tail protein L	NA
UHGV-0174421_19	eggNOG-mapper	1115515.EV102420_11_00050	Phage minor tail protein L	NA
UHGV-0174421_19	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0174421_19	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0174421_19	COG	COG4672	Phage tail protein	NA
UHGV-0174421_19	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-0174421_20	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-0174421_20	PHROG	phrog_30	minor tail protein	tail
UHGV-0174421_20	UniRef90	UniRef90_A0A0F1A581	Peptidase P60	NA
UHGV-0174421_20	eggNOG-mapper	1115515.EV102420_11_00040	Corresponds to locus_tag	NA
UHGV-0174421_20	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-0174421_20	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0174421_20	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0174421_20	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-0174421_21	PHROG	phrog_32	tail assembly protein	tail
UHGV-0174421_21	UniRef90	UniRef90_A0A330DX40	Tail assembly protein	NA
UHGV-0174421_21	eggNOG-mapper	1115515.EV102420_11_00030	Bacteriophage lambda tail assembly protein I	NA
UHGV-0174421_21	Pfam	PF06805	Bacteriophage lambda tail assembly protein I	Lambda_tail_I
UHGV-0174421_21	COG	COG4723	Phage-related protein, tail assembly protein I	NA
UHGV-0174421_21	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-0174421_22	PHROG	phrog_2589	tail protein	tail
UHGV-0174421_22	UniRef90	UniRef90_UPI0007980CC6	NA	NA
UHGV-0174421_22	eggNOG-mapper	1115515.EV102420_11_00020	Fibronectin type 3 domain	NA
UHGV-0174421_22	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0174421_22	Pfam	PF09327	NA	DUF1983
UHGV-0174421_22	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0174421_22	Structural annotation	PF09327, PF13550, PF16323, PF16383, PF14109, NF040662, COG4733	NA	NA
UHGV-0174421_23	PHROG	phrog_1265	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0174421_23	UniRef90	UniRef90_UPI0005C31D16	NA	NA
UHGV-0174421_23	eggNOG-mapper	1073767.G1CSU0_9CAUD	exonuclease activity	NA
UHGV-0174421_23	Pfam	PF20051	NA	DUF6453
UHGV-0174421_23	Structural annotation	PF20051	NA	NA
UHGV-0174421_24	PHROG	phrog_1591	tail fiber protein	tail
UHGV-0174421_24	UniRef90	UniRef90_UPI001CDD6464	phage tail protein	NA
UHGV-0174421_24	eggNOG-mapper	1147158.K7PH95_9CAUD	peptidoglycan catabolic process	NA
UHGV-0174421_24	Structural annotation	PF12195	NA	NA
UHGV-0174421_25	PHROG	phrog_6921	tail fiber protein	tail
UHGV-0174421_25	UniRef90	UniRef90_UPI000794F396	tail fiber domain-containing protein	NA
UHGV-0174421_25	eggNOG-mapper	910964.GEAM_4242	NA	NA
UHGV-0174421_25	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0174421_26	KOfam	K21528	gin; serine recombinase [EC:3.1.22.- 6.5.1.-]	NA
UHGV-0174421_26	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0174421_26	UniRef90	UniRef90_A0A144IWB7	Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0174421_26	eggNOG-mapper	1005994.GTGU_04478	Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0174421_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0174421_26	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0174421_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0174421_26	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0174421_27	PHROG	phrog_19751	NA	unknown function
UHGV-0174421_27	UniRef90	UniRef90_A0A8B0L0G8	Site-specific integrase	NA
UHGV-0174421_27	eggNOG-mapper	573.JG24_11080	DNA integration	NA
UHGV-0174421_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174421_27	Structural annotation	PF00589, MF_02055, TIGR02249, COG0582	NA	NA
UHGV-0174421_28	KOfam	K12149	dinI; DNA-damage-inducible protein I	NA
UHGV-0174421_28	PHROG	phrog_189	RecA filament binding protein DinI	DNA, RNA and nucleotide metabolism
UHGV-0174421_28	UniRef90	UniRef90_A0A8B3URY5	Virulence protein msgA	NA
UHGV-0174421_28	eggNOG-mapper	716541.ECL_01721	DinI-like family	NA
UHGV-0174421_28	Pfam	PF06183	DinI-like family	DinI
UHGV-0174421_28	Structural annotation	PF06183, NF007893	NA	NA