UHGV-0174428

Genome information

Genome length 40,386 bps

CDS count 59

Completeness 100.00% (complete)

geNomad score 0.9701

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174428
vOTU ID	vOTU-046517
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_577398
BioSample	SAMN07501308
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9701
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.97
Jumbo phage	No

Genome content
Genome length	40,386 bps
GC content	30.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	86.98%
Average CDS length	597.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174428_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174428_6	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0174428_7	PHROG	phrog_16126	NA	unknown function
UHGV-0174428_9	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174428_9	UniRef90	UniRef90_A0A6I2QPH6	MazG domain-containing protein	NA
UHGV-0174428_9	eggNOG-mapper	525919.Apre_0826	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0174428_9	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0174428_10	UniRef90	UniRef90_F0H2E6	Conserved domain protein	NA
UHGV-0174428_11	UniRef90	UniRef90_F0H2E3	Conserved domain protein	NA
UHGV-0174428_11	eggNOG-mapper	525919.Apre_0819	NA	NA
UHGV-0174428_13	eggNOG-mapper	887325.HMPREF0381_0090	NA	NA
UHGV-0174428_14	eggNOG-mapper	1111134.HMPREF1253_1195	NA	NA
UHGV-0174428_15	PHROG	phrog_3784	NA	unknown function
UHGV-0174428_15	eggNOG-mapper	1118055.CAGU01000029_gene35	NA	NA
UHGV-0174428_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0174428_20	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174428_20	UniRef90	UniRef90_UPI0011DD99A1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0174428_20	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0174428_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0174428_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0174428_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0174428_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0174428_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0174428_21	UniRef90	UniRef90_A0A233W5R1	IstB_IS21 domain-containing protein	NA
UHGV-0174428_21	eggNOG-mapper	290402.Cbei_3200	PFAM IstB-like ATP binding protein	NA
UHGV-0174428_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0174428_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0174428_21	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0174428_22	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0174428_22	UniRef90	UniRef90_UPI000CFA538D	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0174428_22	eggNOG-mapper	1462526.BN990_03905	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0174428_22	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0174428_22	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0174428_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0174428_23	PHROG	phrog_743	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174428_23	eggNOG-mapper	997350.HMPREF9129_1671	NA	NA
UHGV-0174428_23	Structural annotation	PF05037	NA	NA
UHGV-0174428_24	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174428_24	UniRef90	UniRef90_A0A233W5U2	ATP-binding protein	NA
UHGV-0174428_24	eggNOG-mapper	997350.HMPREF9129_1672	AAA domain	NA
UHGV-0174428_24	Pfam	PF13479	AAA domain	AAA_24
UHGV-0174428_24	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0174428_25	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0174428_25	UniRef90	UniRef90_F9MRI2	Siphovirus	NA
UHGV-0174428_25	eggNOG-mapper	879308.HMPREF9130_0420	Siphovirus Gp157	NA
UHGV-0174428_25	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0174428_25	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0174428_27	eggNOG-mapper	1347392.CCEZ01000005_gene1215	ftsk spoiiie	NA
UHGV-0174428_27	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0174428_30	PHROG	phrog_236	nucleotide kinase	other
UHGV-0174428_30	UniRef90	UniRef90_UPI0002897532	NA	NA
UHGV-0174428_30	eggNOG-mapper	66692.ABC1373	NA	NA
UHGV-0174428_30	Pfam	PF11753	NA	DUF3310
UHGV-0174428_30	Structural annotation	PF11753	NA	NA
UHGV-0174428_32	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0174428_32	Structural annotation	PF21531, NF033787, COG3311	NA	NA
UHGV-0174428_33	UniRef90	UniRef90_A0A233W5Z2	NA	NA
UHGV-0174428_33	eggNOG-mapper	1292035.H476_1036	NA	NA
UHGV-0174428_33	Pfam	PF05339	NA	DUF739
UHGV-0174428_33	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0174428_34	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0174428_34	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0174428_34	UniRef90	UniRef90_A0A233W2M9	HTH cro/C1-type domain-containing protein	NA
UHGV-0174428_34	eggNOG-mapper	596315.HMPREF0634_1108	helix-turn-helix	NA
UHGV-0174428_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174428_34	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0174428_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174428_34	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0174428_35	PHROG	phrog_6600	NA	unknown function
UHGV-0174428_35	UniRef90	UniRef90_UPI001E4919D5	HIRAN domain-containing protein	NA
UHGV-0174428_35	eggNOG-mapper	1280.SAXN108_0311	HIRAN domain	NA
UHGV-0174428_35	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0174428_36	KOfam	K14059	int; integrase	NA
UHGV-0174428_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0174428_36	UniRef90	UniRef90_A0A233W5S1	Tyr recombinase domain-containing protein	NA
UHGV-0174428_36	eggNOG-mapper	1499683.CCFF01000014_gene3573	Belongs to the 'phage' integrase family	NA
UHGV-0174428_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174428_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174428_36	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0174428_37	PHROG	phrog_2277	NA	unknown function
UHGV-0174428_38	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174428_38	UniRef90	UniRef90_A0A6I2QM54	HNH endonuclease	NA
UHGV-0174428_38	eggNOG-mapper	748727.CLJU_c22370	NA	NA
UHGV-0174428_39	PHROG	phrog_1299	holin	lysis
UHGV-0174428_39	UniRef90	UniRef90_A0A1Q8Q308	Holin	NA
UHGV-0174428_39	eggNOG-mapper	1121090.KB894685_gene3583	NA	NA
UHGV-0174428_39	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0174428_39	Structural annotation	PF06946	NA	NA
UHGV-0174428_40	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0174428_40	PHROG	phrog_435	endolysin	lysis
UHGV-0174428_40	UniRef90	UniRef90_A0A233VXT5	MurNAc-LAA domain-containing protein	NA
UHGV-0174428_40	eggNOG-mapper	875454.BAEW01000031_gene1821	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0174428_40	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0174428_40	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174428_40	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0174428_45	PHROG	phrog_19556	tail fiber protein; host specificity	tail
UHGV-0174428_45	eggNOG-mapper	1033733.CAEK01000007_gene1636	Phage minor structural protein	NA
UHGV-0174428_45	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0174428_45	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0174428_45	COG	COG4926	Phage-related protein	NA
UHGV-0174428_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174428_46	UniRef90	UniRef90_A8U7X9	Prophage LambdaSa04, tail protein, putative	NA
UHGV-0174428_46	eggNOG-mapper	592010.GCWU000182_001495	NA	NA
UHGV-0174428_46	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0174428_47	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0174428_47	UniRef90	UniRef90_A0A233W5U9	Phage tail tape measure protein	NA
UHGV-0174428_47	eggNOG-mapper	592010.GCWU000182_001494	Phage-related minor tail protein	NA
UHGV-0174428_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0174428_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0174428_47	COG	COG5283	Phage-related tail protein	NA
UHGV-0174428_47	Structural annotation	PF10145, PF05384, TIGR01760, COG5280	NA	NA
UHGV-0174428_48	PHROG	phrog_16464	NA	unknown function
UHGV-0174428_49	PHROG	phrog_88	major tail protein	tail
UHGV-0174428_49	UniRef90	UniRef90_UPI00101D6026	phage tail protein	NA
UHGV-0174428_49	eggNOG-mapper	1408438.JADD01000021_gene415	NA	NA
UHGV-0174428_49	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0174428_50	UniRef90	UniRef90_W1Q5X5	Phage protein, HK97 gp10 family	NA
UHGV-0174428_50	eggNOG-mapper	592010.GCWU000182_001490	NA	NA
UHGV-0174428_50	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0174428_51	PHROG	phrog_15828	NA	unknown function
UHGV-0174428_51	Structural annotation	PF06141	NA	NA
UHGV-0174428_52	UniRef90	UniRef90_UPI0004B234D6	phage head closure protein	NA
UHGV-0174428_52	eggNOG-mapper	1408438.JADD01000021_gene412	NA	NA
UHGV-0174428_52	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174428_53	PHROG	phrog_749	NA	unknown function
UHGV-0174428_53	UniRef90	UniRef90_UPI001F192A97	head-tail connector protein	NA
UHGV-0174428_53	eggNOG-mapper	592010.GCWU000182_001487	NA	NA
UHGV-0174428_54	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174428_54	UniRef90	UniRef90_A0A233W5Q9	Phage major capsid protein	NA
UHGV-0174428_54	eggNOG-mapper	565653.EGBG_01970	Phage capsid family	NA
UHGV-0174428_54	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174428_54	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174428_54	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0174428_54	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174428_55	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0174428_55	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0174428_55	UniRef90	UniRef90_A0A233W5S0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0174428_55	eggNOG-mapper	592010.GCWU000182_001485	Clp protease	NA
UHGV-0174428_55	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0174428_55	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0174428_55	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0174428_56	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174428_56	UniRef90	UniRef90_W1Q2L9	Phage portal protein, HK97 family	NA
UHGV-0174428_56	eggNOG-mapper	592010.GCWU000182_001484	Phage portal protein	NA
UHGV-0174428_56	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174428_56	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0174428_56	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174428_57	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174428_57	UniRef90	UniRef90_UPI0004806741	terminase large subunit	NA
UHGV-0174428_57	eggNOG-mapper	1408438.JADD01000021_gene407	Phage Terminase	NA
UHGV-0174428_57	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0174428_57	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174428_57	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174428_57	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174428_58	PHROG	phrog_2343	terminase small subunit	head and packaging
UHGV-0174428_58	UniRef90	UniRef90_UPI0004ACBBBB	P27 family phage terminase small subunit	NA
UHGV-0174428_58	eggNOG-mapper	1408438.JADD01000021_gene406	NA	NA
UHGV-0174428_58	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0174428_58	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0174428_59	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0174428_59	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174428_59	UniRef90	UniRef90_A0A233W5N5	HNHc domain-containing protein	NA
UHGV-0174428_59	eggNOG-mapper	592010.GCWU000182_001481	HNH nucleases	NA
UHGV-0174428_59	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0174428_59	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA