UHGV-0174429

Genome information

Genome length 37,813 bps

CDS count 65

Completeness 93.56% (high-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174429
vOTU ID	vOTU-075998
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_577399
BioSample	SAMN07501308
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.56% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	32
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	90.41
Jumbo phage	No

Genome content
Genome length	37,813 bps
GC content	31.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	92.86%
Average CDS length	545.08 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174429_1	KOfam	K14059	int; integrase	NA
UHGV-0174429_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0174429_1	UniRef90	UniRef90_F0H2G6	Site-specific recombinase, phage integrase family	NA
UHGV-0174429_1	eggNOG-mapper	1033733.CAEK01000007_gene1693	Phage integrase family	NA
UHGV-0174429_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174429_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174429_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0174429_2	PHROG	phrog_1847	NA	unknown function
UHGV-0174429_2	UniRef90	UniRef90_UPI00073E21A2	NA	NA
UHGV-0174429_2	eggNOG-mapper	1122173.AXVL01000063_gene384	seryl-tRNA aminoacylation	NA
UHGV-0174429_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0174429_2	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0174429_2	Structural annotation	PF19962	NA	NA
UHGV-0174429_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0174429_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0174429_3	UniRef90	UniRef90_UPI0002F77080	XRE family transcriptional regulator	NA
UHGV-0174429_3	eggNOG-mapper	1118055.CAGU01000029_gene53	Peptidase S24-like	NA
UHGV-0174429_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0174429_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174429_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0174429_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0174429_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0174429_4	eggNOG-mapper	1033733.CAEK01000007_gene1690	NA	NA
UHGV-0174429_5	PHROG	phrog_1534	NA	unknown function
UHGV-0174429_5	eggNOG-mapper	525255.HMPREF0077_0431	NA	NA
UHGV-0174429_8	PHROG	phrog_7409	NA	unknown function
UHGV-0174429_8	eggNOG-mapper	1123230.ARQJ01000015_gene971	NA	NA
UHGV-0174429_9	UniRef90	UniRef90_UPI0002F7FED1	helix-turn-helix transcriptional regulator	NA
UHGV-0174429_9	eggNOG-mapper	1033733.CAEK01000007_gene1687	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174429_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174429_11	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0174429_11	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0174429_11	UniRef90	UniRef90_UPI0002E93648	phage antirepressor KilAC domain-containing protein	NA
UHGV-0174429_11	eggNOG-mapper	1033733.CAEK01000007_gene1684	BRO family, N-terminal domain protein	NA
UHGV-0174429_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0174429_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0174429_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0174429_11	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0174429_13	UniRef90	UniRef90_F0H2G0	Conserved domain protein	NA
UHGV-0174429_14	eggNOG-mapper	1033733.CAEK01000007_gene1681	NA	NA
UHGV-0174429_15	eggNOG-mapper	1118055.CAGU01000029_gene44	NA	NA
UHGV-0174429_17	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174429_17	UniRef90	UniRef90_F0H2F6	YqaJ viral recombinase family protein	NA
UHGV-0174429_17	eggNOG-mapper	1033733.CAEK01000007_gene1678	YqaJ-like viral recombinase domain	NA
UHGV-0174429_17	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0174429_17	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0174429_17	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0174429_17	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0174429_19	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0174429_19	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0174429_19	UniRef90	UniRef90_F0H2F5	Recombinase, phage RecT family	NA
UHGV-0174429_19	eggNOG-mapper	1033733.CAEK01000007_gene1676	RecT family	NA
UHGV-0174429_19	Pfam	PF03837	RecT family	RecT
UHGV-0174429_19	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0174429_19	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0174429_19	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0174429_20	PHROG	phrog_1701	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0174429_20	UniRef90	UniRef90_A0A837SVL8	Phage replication initiation protein	NA
UHGV-0174429_20	eggNOG-mapper	1033733.CAEK01000007_gene1675	DnaD domain protein	NA
UHGV-0174429_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0174429_20	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0174429_21	eggNOG-mapper	1033733.CAEK01000007_gene1674	NA	NA
UHGV-0174429_24	PHROG	phrog_2164	NA	unknown function
UHGV-0174429_24	eggNOG-mapper	1033733.CAEK01000007_gene1672	NA	NA
UHGV-0174429_25	PHROG	phrog_3784	NA	unknown function
UHGV-0174429_25	UniRef90	UniRef90_Q4ZC84	ORF030	NA
UHGV-0174429_25	eggNOG-mapper	938278.CAJO01000051_gene803	NA	NA
UHGV-0174429_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174429_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174429_26	UniRef90	UniRef90_UPI00073F8CC2	single-stranded DNA-binding protein	NA
UHGV-0174429_26	eggNOG-mapper	1033733.CAEK01000007_gene1671	Single-stranded DNA-binding protein	NA
UHGV-0174429_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174429_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174429_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174429_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174429_26	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0174429_29	UniRef90	UniRef90_F0H2E2	Conserved domain protein	NA
UHGV-0174429_30	eggNOG-mapper	1118055.CAGU01000029_gene26	NA	NA
UHGV-0174429_31	UniRef90	UniRef90_F0H2E3	Conserved domain protein	NA
UHGV-0174429_31	eggNOG-mapper	525919.Apre_0819	NA	NA
UHGV-0174429_36	PHROG	phrog_715	MazG-like pyrophosphatase	other
UHGV-0174429_36	UniRef90	UniRef90_UPI0003182729	MazG-like family protein	NA
UHGV-0174429_36	eggNOG-mapper	1118055.CAGU01000029_gene23	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0174429_36	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0174429_36	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0174429_36	Structural annotation	PF12643, MF_01019, NF001613, COG1694	NA	NA
UHGV-0174429_37	PHROG	phrog_2275	NA	unknown function
UHGV-0174429_38	UniRef90	UniRef90_F0H2D3	Conserved domain protein	NA
UHGV-0174429_39	PHROG	phrog_236	nucleotide kinase	other
UHGV-0174429_39	UniRef90	UniRef90_UPI0002F11441	NA	NA
UHGV-0174429_39	eggNOG-mapper	1033733.CAEK01000007_gene1657	NA	NA
UHGV-0174429_39	Pfam	PF11753	NA	DUF3310
UHGV-0174429_40	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174429_40	UniRef90	UniRef90_UPI0010FF41C9	NA	NA
UHGV-0174429_40	eggNOG-mapper	1033733.CAEK01000007_gene1656	NA	NA
UHGV-0174429_40	Pfam	PF06356	NA	DUF1064
UHGV-0174429_40	Structural annotation	PF06356	NA	NA
UHGV-0174429_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174429_41	UniRef90	UniRef90_UPI0002DA415A	NA	NA
UHGV-0174429_41	eggNOG-mapper	1118055.CAGU01000029_gene19	NA	NA
UHGV-0174429_41	Pfam	PF07374	NA	DUF1492
UHGV-0174429_42	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0174429_42	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0174429_42	UniRef90	UniRef90_A0A6N2T5V6	Terminase small subunit	NA
UHGV-0174429_42	eggNOG-mapper	1118055.CAGU01000029_gene18	Terminase small subunit	NA
UHGV-0174429_42	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0174429_42	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0174429_42	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0174429_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174429_43	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0174429_43	UniRef90	UniRef90_A0A090HXA1	Phage terminase large subunit	NA
UHGV-0174429_43	eggNOG-mapper	1033733.CAEK01000007_gene1653	Terminase RNAseH like domain	NA
UHGV-0174429_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0174429_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0174429_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174429_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174429_44	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0174429_44	UniRef90	UniRef90_R6HF73	Phage terminase large subunit PBSX family	NA
UHGV-0174429_44	eggNOG-mapper	1033733.CAEK01000007_gene1653	Terminase RNAseH like domain	NA
UHGV-0174429_44	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0174429_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174429_44	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0174429_45	PHROG	phrog_64	portal protein	head and packaging
UHGV-0174429_45	UniRef90	UniRef90_A0A6N2T2E2	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0174429_45	eggNOG-mapper	1033733.CAEK01000007_gene1652	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0174429_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0174429_45	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0174429_45	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0174429_46	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0174429_46	UniRef90	UniRef90_UPI00058CFE0E	minor capsid protein	NA
UHGV-0174429_46	eggNOG-mapper	1033733.CAEK01000007_gene1651	Phage Mu protein F like protein	NA
UHGV-0174429_46	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0174429_46	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0174429_46	COG	COG2369	NA	NA
UHGV-0174429_48	UniRef90	UniRef90_F0H2C5	Conserved domain protein	NA
UHGV-0174429_48	eggNOG-mapper	1118055.CAGU01000029_gene12	NA	NA
UHGV-0174429_49	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0174429_49	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0174429_49	UniRef90	UniRef90_C2BG33	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0174429_49	eggNOG-mapper	525254.HMPREF0072_1303	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0174429_49	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0174429_49	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0174429_49	COG	COG0338	DNA-adenine methylase	NA
UHGV-0174429_49	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0174429_50	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0174429_50	UniRef90	UniRef90_UPI0010FDF100	NA	NA
UHGV-0174429_50	eggNOG-mapper	1118055.CAGU01000029_gene11	NA	NA
UHGV-0174429_50	Pfam	PF14265	NA	DUF4355
UHGV-0174429_50	Structural annotation	PF14265	NA	NA
UHGV-0174429_51	PHROG	phrog_544	major head protein	head and packaging
UHGV-0174429_51	UniRef90	UniRef90_R9C6R9	NA	NA
UHGV-0174429_51	eggNOG-mapper	1033733.CAEK01000007_gene1646	NA	NA
UHGV-0174429_51	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0174429_52	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0174429_52	UniRef90	UniRef90_H9A0V3	DNA packaging minor head protein	NA
UHGV-0174429_52	eggNOG-mapper	1118055.CAGU01000029_gene9	NA	NA
UHGV-0174429_52	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0174429_53	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0174429_53	eggNOG-mapper	1118055.CAGU01000029_gene8	NA	NA
UHGV-0174429_53	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0174429_54	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174429_54	UniRef90	UniRef90_UPI00037413C5	HK97 gp10 family phage protein	NA
UHGV-0174429_54	eggNOG-mapper	1033733.CAEK01000007_gene1643	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0174429_54	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0174429_54	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0174429_54	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0174429_55	PHROG	phrog_176	tail terminator	connector
UHGV-0174429_55	UniRef90	UniRef90_UPI00069B0316	NA	NA
UHGV-0174429_55	eggNOG-mapper	1033733.CAEK01000007_gene1642	NA	NA
UHGV-0174429_55	Pfam	PF11367	NA	DUF3168
UHGV-0174429_55	Structural annotation	PF11367	NA	NA
UHGV-0174429_56	PHROG	phrog_238	major tail protein	tail
UHGV-0174429_56	UniRef90	UniRef90_A0A6N2T1V7	Phage major tail protein 2	NA
UHGV-0174429_56	eggNOG-mapper	1033733.CAEK01000007_gene1641	Phage tail tube protein	NA
UHGV-0174429_56	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0174429_56	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0174429_56	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0174429_57	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0174429_57	UniRef90	UniRef90_A0A6N2T7V5	NA	NA
UHGV-0174429_57	eggNOG-mapper	1033733.CAEK01000007_gene1640	Phage tail assembly chaperone protein, TAC	NA
UHGV-0174429_57	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0174429_57	Structural annotation	PF12363	NA	NA
UHGV-0174429_58	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0174429_58	eggNOG-mapper	1118055.CAGU01000028_gene112	NA	NA
UHGV-0174429_59	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0174429_59	UniRef90	UniRef90_A0A6N2T6X7	Phage-related minor tail protein	NA
UHGV-0174429_59	eggNOG-mapper	1033733.CAEK01000007_gene1638	Phage-related minor tail protein	NA
UHGV-0174429_59	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0174429_59	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0174429_59	COG	COG5283	Phage-related tail protein	NA
UHGV-0174429_59	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0174429_60	PHROG	phrog_5163	minor tail protein	tail
UHGV-0174429_60	UniRef90	UniRef90_A0A6N2T542	Phage tail protein	NA
UHGV-0174429_60	eggNOG-mapper	1033733.CAEK01000007_gene1637	Phage tail protein	NA
UHGV-0174429_60	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0174429_60	COG	COG4722	Phage-related protein YomH	NA
UHGV-0174429_60	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0174429_61	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0174429_61	UniRef90	UniRef90_UPI0003001A51	phage tail protein	NA
UHGV-0174429_61	eggNOG-mapper	1033733.CAEK01000007_gene1636	Phage minor structural protein	NA
UHGV-0174429_61	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0174429_61	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0174429_61	COG	COG4926	Phage-related protein	NA
UHGV-0174429_61	Structural annotation	PF14594, PF00629, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0174429_63	PHROG	phrog_30034	NA	unknown function
UHGV-0174429_63	UniRef90	UniRef90_UPI0002E9491A	sugar-binding protein	NA
UHGV-0174429_63	eggNOG-mapper	1033733.CAEK01000007_gene1634	NA	NA
UHGV-0174429_63	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0174429_64	eggNOG-mapper	1033733.CAEK01000007_gene1633	NA	NA
UHGV-0174429_65	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0174429_65	PHROG	phrog_7698	endolysin	lysis
UHGV-0174429_65	UniRef90	UniRef90_UPI0002FA4A60	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174429_65	eggNOG-mapper	1033733.CAEK01000007_gene1632	Bacterial SH3 domain	NA
UHGV-0174429_65	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0174429_65	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0174429_65	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0174429_65	Structural annotation	PF01510, PF18342, PF08239, MF_04111, NF040670, NF008758, COG5632	NA	NA