UHGV-0174452

Genome information

Genome length 33,860 bps

CDS count 50

Completeness 84.90% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174452
vOTU ID	vOTU-028759
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585027
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.25
Jumbo phage	No

Genome content
Genome length	33,860 bps
GC content	45.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.91%
Average CDS length	631.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174452_1	PHROG	phrog_199	holin	lysis
UHGV-0174452_1	UniRef90	UniRef90_A0A416VUQ6	Holin	NA
UHGV-0174452_1	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0174452_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0174452_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0174452_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0174452_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0174452_2	UniRef90	UniRef90_A0A3B9G289	Peptidase C51 domain-containing protein	NA
UHGV-0174452_2	eggNOG-mapper	632245.CLP_1931	SH3, type 3 domain protein	NA
UHGV-0174452_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-0174452_2	COG	COG3942	Surface antigen	NA
UHGV-0174452_2	Structural annotation	TIGR02594, COG3942	NA	NA
UHGV-0174452_6	PHROG	phrog_18190	NA	unknown function
UHGV-0174452_6	UniRef90	UniRef90_R7BGL9	NA	NA
UHGV-0174452_6	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0174452_6	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0174452_6	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-0174452_7	PHROG	phrog_1194	NA	unknown function
UHGV-0174452_7	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0174452_7	Pfam	PF20458	NA	DUF6711
UHGV-0174452_7	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0174452_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0174452_8	UniRef90	UniRef90_UPI0004AC99C3	phage tail tape measure protein	NA
UHGV-0174452_8	eggNOG-mapper	1414720.CBYM010000040_gene1655	tail tape measure protein	NA
UHGV-0174452_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0174452_9	PHROG	phrog_706	NA	unknown function
UHGV-0174452_9	UniRef90	UniRef90_R7N4A5	Bacteriophage Gp15 protein	NA
UHGV-0174452_9	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0174452_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0174452_9	Structural annotation	PF06854	NA	NA
UHGV-0174452_10	PHROG	phrog_11299	NA	unknown function
UHGV-0174452_10	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0174452_10	Structural annotation	PF10666	NA	NA
UHGV-0174452_11	PHROG	phrog_3099	NA	unknown function
UHGV-0174452_11	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-0174452_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0174452_12	PHROG	phrog_3266	tail completion	connector
UHGV-0174452_12	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-0174452_12	Structural annotation	PF12691	NA	NA
UHGV-0174452_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0174452_13	UniRef90	UniRef90_UPI00067E9657	minor capsid protein	NA
UHGV-0174452_13	eggNOG-mapper	1235790.C805_00048	NA	NA
UHGV-0174452_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0174452_13	Structural annotation	PF11114	NA	NA
UHGV-0174452_14	PHROG	phrog_3366	NA	unknown function
UHGV-0174452_14	Pfam	PF20536	NA	DUF6751
UHGV-0174452_14	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0174452_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0174452_16	PHROG	phrog_212	major head protein	head and packaging
UHGV-0174452_16	UniRef90	UniRef90_A0A350VVC8	Phage capsid protein	NA
UHGV-0174452_16	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0174452_16	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0174452_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0174452_17	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-0174452_17	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0174452_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0174452_17	Structural annotation	PF06810	NA	NA
UHGV-0174452_18	UniRef90	UniRef90_A0A844E741	Conjugal transfer protein	NA
UHGV-0174452_18	eggNOG-mapper	500632.CLONEX_01476	Cysteine-rich KTR	NA
UHGV-0174452_18	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0174452_18	Structural annotation	PF14205, COG4416	NA	NA
UHGV-0174452_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0174452_20	UniRef90	UniRef90_UPI00156DA0DB	phage minor capsid protein	NA
UHGV-0174452_20	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0174452_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0174452_20	COG	COG2369	NA	NA
UHGV-0174452_20	Structural annotation	PF06152	NA	NA
UHGV-0174452_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0174452_21	UniRef90	UniRef90_A0A6L5YLX0	Phage portal protein	NA
UHGV-0174452_21	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0174452_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0174452_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174452_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0174452_22	UniRef90	UniRef90_A0A350VVC2	PBSX family phage terminase large subunit	NA
UHGV-0174452_22	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0174452_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0174452_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0174452_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174452_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0174452_23	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0174452_23	UniRef90	UniRef90_A0A417T189	Helix-turn-helix domain-containing protein	NA
UHGV-0174452_23	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0174452_23	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0174452_23	Structural annotation	PF07141	NA	NA
UHGV-0174452_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174452_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174452_25	UniRef90	UniRef90_R6Z8U9	Single-stranded DNA-binding protein	NA
UHGV-0174452_25	eggNOG-mapper	742740.HMPREF9474_02547	Single-stranded DNA-binding protein	NA
UHGV-0174452_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174452_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174452_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174452_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174452_25	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0174452_26	eggNOG-mapper	1235792.C808_01244	NA	NA
UHGV-0174452_27	eggNOG-mapper	411461.DORFOR_01156	NA	NA
UHGV-0174452_30	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0174452_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0174452_30	UniRef90	UniRef90_A0A6L5YHS5	Tyrosine-type recombinase/integrase	NA
UHGV-0174452_30	eggNOG-mapper	565653.EGBG_01953	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0174452_30	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0174452_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174452_30	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0174452_30	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0174452_31	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0174452_31	PHROG	phrog_5696	NA	unknown function
UHGV-0174452_31	UniRef90	UniRef90_A0A3D2TWS8	Restriction endonuclease subunit M	NA
UHGV-0174452_31	eggNOG-mapper	500632.CLONEX_03432	N-6 DNA Methylase	NA
UHGV-0174452_31	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0174452_31	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0174452_31	Structural annotation	COG0286	NA	NA
UHGV-0174452_32	PHROG	phrog_15198	NA	unknown function
UHGV-0174452_32	UniRef90	UniRef90_A0A1Q6KA59	NA	NA
UHGV-0174452_32	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0174452_34	Structural annotation	PF18024, TIGR04381	NA	NA
UHGV-0174452_35	PHROG	phrog_17690	NA	unknown function
UHGV-0174452_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174452_36	PHROG	phrog_26861	NA	unknown function
UHGV-0174452_36	UniRef90	UniRef90_R7MAT7	Single-strand binding protein/Primosomal replication protein n	NA
UHGV-0174452_36	eggNOG-mapper	1232452.BAIB02000009_gene1990	Single-strand binding protein family	NA
UHGV-0174452_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174452_36	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0174452_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174452_36	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0174452_37	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0174452_37	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0174452_37	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-0174452_37	eggNOG-mapper	1082931.KKY_554	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0174452_37	Pfam	PF00075	RNase H	RNase_H
UHGV-0174452_37	COG	COG0328	Ribonuclease HI	NA
UHGV-0174452_37	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0174452_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0174452_38	PHROG	phrog_15982	NA	unknown function
UHGV-0174452_38	UniRef90	UniRef90_A0A7X5CGW3	NA	NA
UHGV-0174452_38	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-0174452_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0174452_38	Pfam	PF12961	NA	DUF3850
UHGV-0174452_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0174452_38	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0174452_39	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0174452_39	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0174452_39	UniRef90	UniRef90_A0A3R6XV13	ParA family protein	NA
UHGV-0174452_39	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0174452_39	Pfam	PF13614	AAA domain	AAA_31
UHGV-0174452_39	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0174452_39	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0174452_41	PHROG	phrog_824	NA	unknown function
UHGV-0174452_41	UniRef90	UniRef90_A0A2N0K9N3	Nuclease	NA
UHGV-0174452_41	eggNOG-mapper	742741.HMPREF9475_00407	VRR_NUC	NA
UHGV-0174452_41	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0174452_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174452_42	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0174452_42	eggNOG-mapper	411459.RUMOBE_01756	COG NOG14934 non supervised orthologous group	NA
UHGV-0174452_42	Structural annotation	PF21578	NA	NA
UHGV-0174452_44	PHROG	phrog_32437	NA	unknown function
UHGV-0174452_44	UniRef90	UniRef90_A0A350VVB0	SLT domain-containing protein	NA
UHGV-0174452_44	eggNOG-mapper	246194.CHY_0404	PFAM Lytic transglycosylase catalytic	NA
UHGV-0174452_44	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0174452_44	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0174452_44	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0174452_46	eggNOG-mapper	1232443.BAIA02000079_gene64	NA	NA
UHGV-0174452_49	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0174452_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174452_49	UniRef90	UniRef90_A0A350VVA1	XRE family transcriptional regulator	NA
UHGV-0174452_49	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174452_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174452_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174452_49	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0174452_50	PHROG	phrog_87	metallo-protease	other
UHGV-0174452_50	UniRef90	UniRef90_A0A350VV99	Peptidase_M78 domain-containing protein	NA
UHGV-0174452_50	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-0174452_50	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0174452_50	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0174452_50	Structural annotation	PF06114	NA	NA