UHGV-0174471

Genome information

Genome length 35,430 bps

CDS count 48

Completeness 60.06% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174471
vOTU ID	vOTU-028760
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_579972
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.39
Jumbo phage	No

Genome content
Genome length	35,430 bps
GC content	38.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	87.46%
Average CDS length	647.00 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174471_1	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0174471_1	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0174471_1	Structural annotation	PF16677	NA	NA
UHGV-0174471_2	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0174471_2	UniRef90	UniRef90_A0A3R6KI17	Nucleotide pyrophosphohydrolase	NA
UHGV-0174471_2	eggNOG-mapper	935948.KE386495_gene1342	MazG nucleotide pyrophosphohydrolase	NA
UHGV-0174471_2	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0174471_2	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0174471_2	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0174471_3	PHROG	phrog_236	nucleotide kinase	other
UHGV-0174471_3	UniRef90	UniRef90_A0A2I1M1I6	NA	NA
UHGV-0174471_3	eggNOG-mapper	1200557.JHWV01000001_gene285	NA	NA
UHGV-0174471_3	Pfam	PF11753	NA	DUF3310
UHGV-0174471_6	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0174471_9	Structural annotation	PF04466	NA	NA
UHGV-0174471_12	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0174471_12	UniRef90	UniRef90_A0A352SH30	Terminase_6C domain-containing protein	NA
UHGV-0174471_12	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0174471_12	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0174471_12	COG	COG5410	NA	NA
UHGV-0174471_12	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0174471_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174471_13	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0174471_13	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0174471_13	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0174471_13	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0174471_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0174471_14	UniRef90	UniRef90_UPI001D0761B7	phage portal protein	NA
UHGV-0174471_14	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0174471_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0174471_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0174471_15	PHROG	phrog_19695	NA	unknown function
UHGV-0174471_15	eggNOG-mapper	1232452.BAIB02000007_gene1611	NA	NA
UHGV-0174471_15	Structural annotation	PF19714	NA	NA
UHGV-0174471_16	UniRef90	UniRef90_A0A174NC72	BppU_N domain-containing protein	NA
UHGV-0174471_16	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0174471_16	Structural annotation	PF10651, PF20328	NA	NA
UHGV-0174471_17	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0174471_18	PHROG	phrog_909	major head protein	head and packaging
UHGV-0174471_18	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0174471_18	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0174471_19	PHROG	phrog_29	major head protein	head and packaging
UHGV-0174471_19	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0174471_19	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0174471_19	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0174471_19	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0174471_20	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0174471_20	Structural annotation	PF21169	NA	NA
UHGV-0174471_21	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0174471_22	PHROG	phrog_4105	NA	unknown function
UHGV-0174471_22	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0174471_23	PHROG	phrog_1129	holin	lysis
UHGV-0174471_23	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0174471_23	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0174471_23	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0174471_23	Structural annotation	PF06946	NA	NA
UHGV-0174471_24	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0174471_25	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0174471_25	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0174471_25	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0174471_26	Structural annotation	PF05657	NA	NA
UHGV-0174471_27	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0174471_27	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0174471_28	PHROG	phrog_36112	NA	unknown function
UHGV-0174471_28	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0174471_28	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0174471_28	Structural annotation	PF16478	NA	NA
UHGV-0174471_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0174471_30	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0174471_30	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0174471_31	PHROG	phrog_1194	NA	unknown function
UHGV-0174471_31	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0174471_31	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0174471_32	PHROG	phrog_6616	tail protein	tail
UHGV-0174471_32	UniRef90	UniRef90_A0A317UCC3	Peptidase S74 domain-containing protein	NA
UHGV-0174471_32	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0174471_32	COG	COG4926	Phage-related protein	NA
UHGV-0174471_33	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0174471_33	PHROG	phrog_435	endolysin	lysis
UHGV-0174471_33	UniRef90	UniRef90_UPI000D659E9B	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174471_33	eggNOG-mapper	1256908.HMPREF0373_00462	Cell wall hydrolase autolysin	NA
UHGV-0174471_33	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0174471_33	Pfam	PF21540	Choline-binding repeat	Choline_bind_4
UHGV-0174471_33	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0174471_33	Structural annotation	PF01520, PF19127, MF_00417, TIGR02883, TIGR04035, COG0860	NA	NA
UHGV-0174471_34	PHROG	phrog_32721	NA	unknown function
UHGV-0174471_34	UniRef90	UniRef90_X8HUR1	Putative lipoprotein	NA
UHGV-0174471_34	eggNOG-mapper	1476973.JMMB01000007_gene2215	NA	NA
UHGV-0174471_34	Structural annotation	PF21223, TIGR04209	NA	NA
UHGV-0174471_35	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0174471_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174471_35	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0174471_35	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0174471_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174471_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174471_35	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174471_36	Structural annotation	TIGR03745	NA	NA
UHGV-0174471_37	Pfam	PF07295	Zinc-ribbon containing domain	DUF1451
UHGV-0174471_40	PHROG	phrog_32192	NA	unknown function
UHGV-0174471_40	UniRef90	UniRef90_UPI001D0221FF	alanine-zipper protein	NA
UHGV-0174471_40	eggNOG-mapper	397290.C810_05153	NA	NA
UHGV-0174471_41	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0174471_41	UniRef90	UniRef90_UPI001BED9A05	ORF6C domain-containing protein	NA
UHGV-0174471_41	eggNOG-mapper	596315.HMPREF0634_0237	BRO family, N-terminal domain protein	NA
UHGV-0174471_41	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0174471_41	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0174471_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0174471_41	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0174471_42	PHROG	phrog_4292	NA	unknown function
UHGV-0174471_42	eggNOG-mapper	411460.RUMTOR_01375	NA	NA
UHGV-0174471_45	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0174471_45	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174471_45	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0174471_45	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0174471_45	Pfam	PF13476	AAA domain	AAA_23
UHGV-0174471_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0174471_45	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0174471_47	PHROG	phrog_9958	NA	unknown function
UHGV-0174471_47	UniRef90	UniRef90_F7JKD2	NA	NA
UHGV-0174471_47	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0174471_47	Pfam	PF19789	NA	DUF6273
UHGV-0174471_47	Structural annotation	PF19789	NA	NA
UHGV-0174471_48	PHROG	phrog_4433	NA	unknown function
UHGV-0174471_48	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0174471_48	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0174471_48	Structural annotation	NF000318	NA	NA