UHGV-0174480

Genome information

vOTU vOTU-019738

Genome length 22,283 bps

CDS count 37

Completeness 66.37% (medium-quality)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174480
vOTU ID	vOTU-019738
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_579067
BioSample	SAMN07501046
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.99
Jumbo phage	No

Genome content
Genome length	22,283 bps
GC content	30.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.99%
Average CDS length	560.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174480_1	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0174480_1	UniRef90	UniRef90_UPI000C08C452	phage tail protein	NA
UHGV-0174480_1	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0174480_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0174480_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0174480_1	COG	COG4926	Phage-related protein	NA
UHGV-0174480_1	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0174480_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174480_2	UniRef90	UniRef90_UPI0015B3D59E	phage tail family protein	NA
UHGV-0174480_2	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0174480_2	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0174480_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0174480_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0174480_3	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0174480_3	UniRef90	UniRef90_UPI00189C4B70	phage tail tape measure protein	NA
UHGV-0174480_3	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-0174480_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0174480_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0174480_3	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0174480_3	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0174480_5	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0174480_5	Structural annotation	PF06896	NA	NA
UHGV-0174480_6	PHROG	phrog_88	major tail protein	tail
UHGV-0174480_6	UniRef90	UniRef90_UPI001897D7CF	major tail protein	NA
UHGV-0174480_6	eggNOG-mapper	411468.CLOSCI_01496	phage major tail protein, phi13 family	NA
UHGV-0174480_6	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0174480_6	COG	COG5492	NA	NA
UHGV-0174480_6	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0174480_7	PHROG	phrog_78	tail terminator	connector
UHGV-0174480_7	UniRef90	UniRef90_T0D5T1	Putative gp10 protein	NA
UHGV-0174480_7	eggNOG-mapper	195103.CPF_1580	NA	NA
UHGV-0174480_7	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0174480_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174480_8	UniRef90	UniRef90_UPI00189AB161	HK97 gp10 family phage protein	NA
UHGV-0174480_8	eggNOG-mapper	411468.CLOSCI_01494	Phage protein, HK97 gp10 family	NA
UHGV-0174480_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0174480_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0174480_8	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0174480_9	UniRef90	UniRef90_UPI00189C2B5F	phage head closure protein	NA
UHGV-0174480_9	eggNOG-mapper	411459.RUMOBE_01731	Phage head-tail adaptor	NA
UHGV-0174480_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0174480_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0174480_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0174480_10	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0174480_10	UniRef90	UniRef90_UPI0018971C9F	head-tail connector protein	NA
UHGV-0174480_10	eggNOG-mapper	1195236.CTER_5110	Phage gp6-like head-tail connector protein	NA
UHGV-0174480_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0174480_10	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0174480_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0174480_11	UniRef90	UniRef90_UPI00115995DB	collagen-like protein	NA
UHGV-0174480_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0174480_12	UniRef90	UniRef90_A0A174D5U9	Phage major capsid protein, HK97 family	NA
UHGV-0174480_12	eggNOG-mapper	903814.ELI_3113	Phage capsid family	NA
UHGV-0174480_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0174480_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0174480_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0174480_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0174480_13	KOfam	K06904	NA	NA
UHGV-0174480_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0174480_13	UniRef90	UniRef90_A0A174DA75	Phage prohead protease, HK97 family	NA
UHGV-0174480_13	eggNOG-mapper	1187894.I2E8Y9_9CAUD	peptidase activity	NA
UHGV-0174480_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0174480_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0174480_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0174480_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0174480_14	UniRef90	UniRef90_A0A174D612	Phage portal protein, HK97 family	NA
UHGV-0174480_14	eggNOG-mapper	394503.Ccel_2959	Phage portal protein, HK97 family	NA
UHGV-0174480_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0174480_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0174480_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0174480_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0174480_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0174480_16	UniRef90	UniRef90_A0A1C6K0V5	Phage terminase-like protein, large subunit	NA
UHGV-0174480_16	eggNOG-mapper	755731.Clo1100_1160	Terminase	NA
UHGV-0174480_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0174480_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0174480_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0174480_16	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0174480_17	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0174480_17	UniRef90	UniRef90_A0A1C6DLV1	Phage terminase, small subunit	NA
UHGV-0174480_17	eggNOG-mapper	1291050.JAGE01000001_gene2918	phage terminase small subunit	NA
UHGV-0174480_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0174480_17	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0174480_17	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0174480_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0174480_18	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174480_18	UniRef90	UniRef90_UPI001A9BD19C	HNH endonuclease	NA
UHGV-0174480_18	eggNOG-mapper	1195236.CTER_5117	HNH endonuclease	NA
UHGV-0174480_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0174480_19	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0174480_19	UniRef90	UniRef90_A0A0D1BWY8	Xaa-His dipeptidase	NA
UHGV-0174480_19	eggNOG-mapper	536232.CLM_1653	NA	NA
UHGV-0174480_19	Structural annotation	PF07141	NA	NA
UHGV-0174480_20	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0174480_20	PHROG	phrog_216	integrase	integration and excision
UHGV-0174480_20	UniRef90	UniRef90_UPI00189956A8	tyrosine-type recombinase/integrase	NA
UHGV-0174480_20	eggNOG-mapper	1414720.CBYM010000001_gene692	Phage integrase family	NA
UHGV-0174480_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174480_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174480_20	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0174480_21	PHROG	phrog_15827	NA	unknown function
UHGV-0174480_21	UniRef90	UniRef90_A0A0A7HFV1	Zn-finger containing protein	NA
UHGV-0174480_21	eggNOG-mapper	536233.CLO_0877	DNA-directed 5'-3' RNA polymerase activity	NA
UHGV-0174480_21	COG	COG1996	DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger	NA
UHGV-0174480_21	Structural annotation	PF09723, TIGR02605, COG1996	NA	NA
UHGV-0174480_22	PHROG	phrog_9628	NA	unknown function
UHGV-0174480_22	UniRef90	UniRef90_UPI00189AFC52	DNA-binding response regulator	NA
UHGV-0174480_22	eggNOG-mapper	536233.CLO_0876	NA	NA
UHGV-0174480_22	Structural annotation	PF06056, COG2771	NA	NA
UHGV-0174480_23	PHROG	phrog_38492	NA	unknown function
UHGV-0174480_23	UniRef90	UniRef90_UPI00189AC004	helix-turn-helix transcriptional regulator	NA
UHGV-0174480_23	eggNOG-mapper	632245.CLP_2705	Helix-turn-helix	NA
UHGV-0174480_24	eggNOG-mapper	1280689.AUJC01000011_gene1503	NA	NA
UHGV-0174480_31	PHROG	phrog_3930	NA	unknown function
UHGV-0174480_31	eggNOG-mapper	1280689.AUJC01000011_gene1505	NA	NA
UHGV-0174480_33	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174480_33	UniRef90	UniRef90_UPI000DCF9DB5	NA	NA
UHGV-0174480_33	eggNOG-mapper	1204534.J9QD24_9CAUD	NA	NA
UHGV-0174480_33	Pfam	PF12961	NA	DUF3850
UHGV-0174480_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0174480_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0174480_34	UniRef90	UniRef90_UPI000C08AB2C	DNA cytosine methyltransferase	NA
UHGV-0174480_34	eggNOG-mapper	1211817.CCAT010000049_gene2479	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0174480_34	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0174480_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0174480_34	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0174480_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0174480_34	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0174480_35	Structural annotation	NF009256	NA	NA
UHGV-0174480_36	PHROG	phrog_1974	NA	unknown function
UHGV-0174480_36	UniRef90	UniRef90_UPI00189EDC1B	nucleoid-associated protein	NA
UHGV-0174480_36	eggNOG-mapper	1280689.AUJC01000001_gene2467	37-kD nucleoid-associated bacterial protein	NA
UHGV-0174480_36	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0174480_36	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0174480_36	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0174480_37	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0174480_37	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0174480_37	UniRef90	UniRef90_UPI00189B17E9	DNA polymerase III subunit beta	NA
UHGV-0174480_37	eggNOG-mapper	1410668.JNKC01000004_gene348	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0174480_37	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0174480_37	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA