UHGV-0174531

Genome information

Genome length 39,425 bps

CDS count 62

Completeness 96.88% (high-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0174531
vOTU ID	vOTU-061524
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584406
BioSample	SAMN09781752
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.88% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.91
Jumbo phage	No

Genome content
Genome length	39,425 bps
GC content	53.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.73%
Average CDS length	581.18 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0174531_1	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0174531_1	UniRef90	UniRef90_A0A1Y0VNH5	Phg_2220_C domain-containing protein	NA
UHGV-0174531_1	eggNOG-mapper	358681.BBR47_29040	NA	NA
UHGV-0174531_1	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0174531_1	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0174531_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0174531_2	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0174531_2	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0174531_2	UniRef90	UniRef90_A0A349YQ92	IstB_IS21 domain-containing protein	NA
UHGV-0174531_2	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0174531_2	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0174531_2	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0174531_2	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0174531_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0174531_3	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0174531_3	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0174531_4	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0174531_4	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0174531_4	UniRef90	UniRef90_A0A101WI32	Methyltransferase	NA
UHGV-0174531_4	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0174531_4	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0174531_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0174531_4	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0174531_4	COG	COG0863	DNA modification methylase	NA
UHGV-0174531_4	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0174531_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0174531_7	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0174531_7	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0174531_7	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0174531_7	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0174531_7	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0174531_7	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0174531_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-0174531_7	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0174531_8	PHROG	phrog_64	portal protein	head and packaging
UHGV-0174531_8	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0174531_8	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0174531_8	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0174531_8	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0174531_10	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0174531_10	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0174531_10	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0174531_10	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0174531_10	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0174531_10	COG	COG2369	NA	NA
UHGV-0174531_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0174531_12	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0174531_12	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0174531_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0174531_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0174531_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0174531_13	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0174531_13	Structural annotation	PF06810	NA	NA
UHGV-0174531_14	PHROG	phrog_544	major head protein	head and packaging
UHGV-0174531_14	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0174531_14	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0174531_14	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0174531_16	PHROG	phrog_17977	NA	unknown function
UHGV-0174531_16	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0174531_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0174531_17	Structural annotation	PF11367	NA	NA
UHGV-0174531_18	PHROG	phrog_885	major tail protein	tail
UHGV-0174531_18	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0174531_18	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0174531_18	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0174531_19	PHROG	phrog_18646	NA	unknown function
UHGV-0174531_20	PHROG	phrog_20920	NA	unknown function
UHGV-0174531_20	eggNOG-mapper	1536770.R50345_22870	NA	NA
UHGV-0174531_20	Structural annotation	PF16674	NA	NA
UHGV-0174531_21	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0174531_21	UniRef90	UniRef90_A0A0D0SGC8	Phage minor tail protein	NA
UHGV-0174531_21	eggNOG-mapper	1437608.BBIA_2554	phage tail tape measure protein	NA
UHGV-0174531_21	COG	COG5412	Phage-related protein	NA
UHGV-0174531_21	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0174531_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0174531_22	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0174531_22	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-0174531_22	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0174531_22	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0174531_23	PHROG	phrog_538	minor tail protein	tail
UHGV-0174531_23	UniRef90	UniRef90_A0A6B9SRK1	Endopeptidase tail protein	NA
UHGV-0174531_23	eggNOG-mapper	411902.CLOBOL_03869	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0174531_23	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0174531_23	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0174531_24	PHROG	phrog_9534	head protein	head and packaging
UHGV-0174531_24	UniRef90	UniRef90_S3FGB8	Carbohydrate-binding CenC domain protein	NA
UHGV-0174531_24	eggNOG-mapper	431943.CKL_4054	COG NOG18825 non supervised orthologous group	NA
UHGV-0174531_24	Structural annotation	PF13157	NA	NA
UHGV-0174531_25	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0174531_25	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0174531_27	KOfam	K07273	acm; lysozyme	NA
UHGV-0174531_27	PHROG	phrog_291	endolysin	lysis
UHGV-0174531_27	UniRef90	UniRef90_UPI00164A97A0	glycoside hydrolase family 25 protein	NA
UHGV-0174531_27	eggNOG-mapper	537013.CLOSTMETH_03464	Glycosyl hydrolases family 25	NA
UHGV-0174531_27	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0174531_27	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0174531_27	Structural annotation	PF01183, PF05194, COG3757	NA	NA
UHGV-0174531_28	PHROG	phrog_1863	NA	unknown function
UHGV-0174531_28	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0174531_29	PHROG	phrog_1129	holin	lysis
UHGV-0174531_29	UniRef90	UniRef90_UPI001F43F0BF	phage holin family protein	NA
UHGV-0174531_29	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0174531_29	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0174531_29	Structural annotation	PF06946	NA	NA
UHGV-0174531_30	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0174531_30	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0174531_30	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0174531_30	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0174531_31	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174531_31	UniRef90	UniRef90_A0A0U5PL36	AP2 domain protein	NA
UHGV-0174531_31	eggNOG-mapper	1304866.K413DRAFT_4685	NA	NA
UHGV-0174531_32	eggNOG-mapper	1394176.AWUO01000014_gene642	NA	NA
UHGV-0174531_32	Structural annotation	PF07825, TIGR01764, COG3311	NA	NA
UHGV-0174531_34	eggNOG-mapper	469378.Ccur_02570	NA	NA
UHGV-0174531_35	PHROG	phrog_3754	NA	unknown function
UHGV-0174531_35	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0174531_36	PHROG	phrog_21718	NA	unknown function
UHGV-0174531_36	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0174531_37	PHROG	phrog_22984	NA	unknown function
UHGV-0174531_38	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174531_38	UniRef90	UniRef90_A0A4U3AX86	HNHc domain-containing protein	NA
UHGV-0174531_38	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0174531_38	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0174531_38	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0174531_38	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0174531_38	Structural annotation	PF07463, PF07453	NA	NA
UHGV-0174531_39	PHROG	phrog_16490	NA	unknown function
UHGV-0174531_39	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0174531_40	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0174531_40	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-0174531_40	eggNOG-mapper	632245.CLP_1610	NA	NA
UHGV-0174531_41	PHROG	phrog_20016	NA	unknown function
UHGV-0174531_41	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0174531_41	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0174531_41	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0174531_42	Structural annotation	PF12510	NA	NA
UHGV-0174531_43	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0174531_44	KOfam	K14059	int; integrase	NA
UHGV-0174531_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0174531_44	UniRef90	UniRef90_UPI0019575017	site-specific integrase	NA
UHGV-0174531_44	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0174531_44	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0174531_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0174531_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0174531_44	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0174531_45	UniRef90	UniRef90_A0A845R7F5	XRE family transcriptional regulator	NA
UHGV-0174531_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174531_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174531_45	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0174531_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174531_46	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0174531_46	UniRef90	UniRef90_UPI0003F5620E	helix-turn-helix domain-containing protein	NA
UHGV-0174531_46	eggNOG-mapper	1122173.AXVL01000018_gene460	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174531_46	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0174531_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174531_47	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0174531_47	UniRef90	UniRef90_A0A0W7TND2	HTH cro/C1-type domain-containing protein	NA
UHGV-0174531_47	eggNOG-mapper	393480.FNP_2368	Helix-turn-helix XRE-family like proteins	NA
UHGV-0174531_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0174531_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0174531_47	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0174531_48	UniRef90	UniRef90_A0A417IT45	NA	NA
UHGV-0174531_48	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-0174531_48	Pfam	PF05339	NA	DUF739
UHGV-0174531_48	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0174531_49	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0174531_49	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0174531_49	UniRef90	UniRef90_A0A6N2R468	Bro-N domain-containing protein	NA
UHGV-0174531_49	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0174531_49	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0174531_49	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0174531_49	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0174531_50	Structural annotation	PF21611	NA	NA
UHGV-0174531_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0174531_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0174531_51	UniRef90	UniRef90_A0A838JA74	Helix-turn-helix transcriptional regulator	NA
UHGV-0174531_51	eggNOG-mapper	479434.Sthe_2230	sequence-specific DNA binding	NA
UHGV-0174531_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0174531_51	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0174531_51	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0174531_56	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0174531_56	UniRef90	UniRef90_E2ZNS5	Siphovirus Gp157	NA
UHGV-0174531_56	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0174531_56	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0174531_56	Structural annotation	PF05565	NA	NA
UHGV-0174531_57	PHROG	phrog_14970	NA	unknown function
UHGV-0174531_57	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0174531_57	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0174531_57	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0174531_57	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0174531_57	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0174531_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0174531_58	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0174531_58	UniRef90	UniRef90_A0A6S6RB80	Single-stranded DNA-binding protein	NA
UHGV-0174531_58	eggNOG-mapper	1408436.JHXY01000007_gene409	Single-stranded DNA-binding protein	NA
UHGV-0174531_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0174531_58	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0174531_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0174531_58	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0174531_58	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0174531_59	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0174531_59	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0174531_59	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0174531_59	eggNOG-mapper	220668.lp_2433	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0174531_59	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0174531_59	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0174531_60	PHROG	phrog_6721	NA	unknown function
UHGV-0174531_60	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-0174531_62	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0174531_62	UniRef90	UniRef90_A0A413Z5U5	Phage_rep_org_N domain-containing protein	NA
UHGV-0174531_62	eggNOG-mapper	469604.HMPREF0946_01101	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0174531_62	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0174531_62	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0174531_62	Structural annotation	PF09681, TIGR01714, COG1321	NA	NA